| Свойство | Тип | Описание | |
|---|---|---|---|
| Alpha | double | ||
| DefaultAlpha | double | ||
| UndoMethod | SegmentSplitUndo |
| Метод | Описание | |
|---|---|---|
| SegmentGenome ( string outPath, SegmentationMethod method, bool isGermline ) : void | ||
| Segmentation ( string inputBinPath, string forbiddenBedPath, string dataType = "logratio", int maxInterBinDistInSegment = 1000000 ) : System |
| Метод | Описание | |
|---|---|---|
| CBS ( uint nPerm = 10000, string pMethod = "hybrid", int minWidth = 2, int kMax = 25, uint nMin = 200, double eta = 0.05, uint sbdry = null, double trim = 0.025, double undoPrune = 0.05, double undoSD = 3, int verbose = 1 ) : void |
CBS: circular binary segmentation porting the R function segment in DNAcopy
|
|
| GetDummySegmentationResults ( ) : GenomeSegmentationResults | ||
| ReadBEDInput ( ) : void |
Assume that the rows are sorted by the start position and ascending order
|
|
| Wavelets ( bool isGermline, double thresholdLower = 5, double thresholdUpper = 80, int minSize = 10, int verbose = 1 ) : void |
Wavelets: unbalanced HAAR wavelets segmentation
|
|
| WriteCanvasPartitionResults ( string outPath ) : void |
| public SegmentGenome ( string outPath, SegmentationMethod method, bool isGermline ) : void | ||
| outPath | string | |
| method | SegmentationMethod | |
| isGermline | bool | |
| Результат | void | |
| public Segmentation ( string inputBinPath, string forbiddenBedPath, string dataType = "logratio", int maxInterBinDistInSegment = 1000000 ) : System | ||
| inputBinPath | string | |
| forbiddenBedPath | string | |
| dataType | string | |
| maxInterBinDistInSegment | int | |
| Результат | System | |
