Property | Type | Description | |
---|---|---|---|
Alpha | double | ||
DefaultAlpha | double | ||
UndoMethod | SegmentSplitUndo |
Method | Description | |
---|---|---|
SegmentGenome ( string outPath, SegmentationMethod method, bool isGermline ) : void | ||
Segmentation ( string inputBinPath, string forbiddenBedPath, string dataType = "logratio", int maxInterBinDistInSegment = 1000000 ) : System |
Method | Description | |
---|---|---|
CBS ( uint nPerm = 10000, string pMethod = "hybrid", int minWidth = 2, int kMax = 25, uint nMin = 200, double eta = 0.05, uint sbdry = null, double trim = 0.025, double undoPrune = 0.05, double undoSD = 3, int verbose = 1 ) : void |
CBS: circular binary segmentation porting the R function segment in DNAcopy
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GetDummySegmentationResults ( ) : GenomeSegmentationResults | ||
ReadBEDInput ( ) : void |
Assume that the rows are sorted by the start position and ascending order
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Wavelets ( bool isGermline, double thresholdLower = 5, double thresholdUpper = 80, int minSize = 10, int verbose = 1 ) : void |
Wavelets: unbalanced HAAR wavelets segmentation
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WriteCanvasPartitionResults ( string outPath ) : void |
public SegmentGenome ( string outPath, SegmentationMethod method, bool isGermline ) : void | ||
outPath | string | |
method | SegmentationMethod | |
isGermline | bool | |
return | void |
public Segmentation ( string inputBinPath, string forbiddenBedPath, string dataType = "logratio", int maxInterBinDistInSegment = 1000000 ) : System | ||
inputBinPath | string | |
forbiddenBedPath | string | |
dataType | string | |
maxInterBinDistInSegment | int | |
return | System |