C# Class CanvasPartition.Segmentation

Afficher le fichier Open project: Illumina/canvas Class Usage Examples

Méthodes publiques

Свойство Type Description
Alpha double
DefaultAlpha double
UndoMethod SegmentSplitUndo

Méthodes publiques

Méthode Description
SegmentGenome ( string outPath, SegmentationMethod method, bool isGermline ) : void
Segmentation ( string inputBinPath, string forbiddenBedPath, string dataType = "logratio", int maxInterBinDistInSegment = 1000000 ) : System

Private Methods

Méthode Description
CBS ( uint nPerm = 10000, string pMethod = "hybrid", int minWidth = 2, int kMax = 25, uint nMin = 200, double eta = 0.05, uint sbdry = null, double trim = 0.025, double undoPrune = 0.05, double undoSD = 3, int verbose = 1 ) : void

CBS: circular binary segmentation porting the R function segment in DNAcopy
GetDummySegmentationResults ( ) : GenomeSegmentationResults
ReadBEDInput ( ) : void

Assume that the rows are sorted by the start position and ascending order
Wavelets ( bool isGermline, double thresholdLower = 5, double thresholdUpper = 80, int minSize = 10, int verbose = 1 ) : void

Wavelets: unbalanced HAAR wavelets segmentation
WriteCanvasPartitionResults ( string outPath ) : void

Method Details

SegmentGenome() public méthode

public SegmentGenome ( string outPath, SegmentationMethod method, bool isGermline ) : void
outPath string
method SegmentationMethod
isGermline bool
Résultat void

Segmentation() public méthode

public Segmentation ( string inputBinPath, string forbiddenBedPath, string dataType = "logratio", int maxInterBinDistInSegment = 1000000 ) : System
inputBinPath string
forbiddenBedPath string
dataType string
maxInterBinDistInSegment int
Résultat System

Property Details

Alpha public_oe property

public double Alpha
Résultat double

DefaultAlpha public_oe static_oe property

public static double DefaultAlpha
Résultat double

UndoMethod public_oe property

public SegmentSplitUndo UndoMethod
Résultat SegmentSplitUndo