C# Class CanvasClean.EnrichmentUtilities

Mostra file Open project: Illumina/canvas Class Usage Examples

Public Properties

Property	Type	Description
numberOfGCbins	int

Public Methods

Method	Description
GetCountsByGC ( List bins, NexteraManifest manifest, List &countsByGC, List &counts ) : void	Assumes the bins are sorted by genomic coordinates
GetOnTargetBins ( IEnumerable bins, NexteraManifest manifest ) : IEnumerable	Get the on-target bins by intersecting the manifest.

Method Details

GetCountsByGC() public static method

Assumes the bins are sorted by genomic coordinates

public static GetCountsByGC ( List bins, NexteraManifest manifest, List &countsByGC, List &counts ) : void
bins	List	Bins whose counts are to be normalized
manifest	NexteraManifest
countsByGC	List	An array of lists. Each array element (0-100) will hold a list of counts whose bins have the same GC content.
counts	List	Will hold all of the autosomal counts present in 'bins'
return	void

GetOnTargetBins() public static method

Get the on-target bins by intersecting the manifest.

public static GetOnTargetBins ( IEnumerable bins, NexteraManifest manifest ) : IEnumerable
bins	IEnumerable
manifest	NexteraManifest
return	IEnumerable

Property Details

numberOfGCbins public_oe static_oe property

public static int numberOfGCbins
return	int