C# Class CanvasClean.EnrichmentUtilities

Afficher le fichier Open project: Illumina/canvas Class Usage Examples

Méthodes publiques

Свойство	Type	Description
numberOfGCbins	int

Méthodes publiques

Méthode	Description
GetCountsByGC ( List bins, NexteraManifest manifest, List &countsByGC, List &counts ) : void	Assumes the bins are sorted by genomic coordinates
GetOnTargetBins ( IEnumerable bins, NexteraManifest manifest ) : IEnumerable	Get the on-target bins by intersecting the manifest.

Method Details

GetCountsByGC() public static méthode

Assumes the bins are sorted by genomic coordinates

public static GetCountsByGC ( List bins, NexteraManifest manifest, List &countsByGC, List &counts ) : void
bins	List	Bins whose counts are to be normalized
manifest	NexteraManifest
countsByGC	List	An array of lists. Each array element (0-100) will hold a list of counts whose bins have the same GC content.
counts	List	Will hold all of the autosomal counts present in 'bins'
Résultat	void

GetOnTargetBins() public static méthode

Get the on-target bins by intersecting the manifest.

public static GetOnTargetBins ( IEnumerable bins, NexteraManifest manifest ) : IEnumerable
bins	IEnumerable
manifest	NexteraManifest
Résultat	IEnumerable

Property Details

numberOfGCbins public_oe static_oe property

public static int numberOfGCbins
Résultat	int