C# 클래스 Morpheus.DatabaseSearcher

파일 보기 프로젝트 열기: cwenger/Morpheus 1 사용 예제들

공개 메소드들

메소드	설명
DatabaseSearcher ( IList dataFilepaths, int minimumAssumedPrecursorChargeState, int maximumAssumedPrecursorChargeState, double absoluteThreshold, double relativeThresholdPercent, int maximumNumberOfPeaks, bool assignChargeStates, bool deisotope, string proteomeDatabaseFilepath, bool onTheFlyDecoys, Protease protease, int maximumMissedCleavages, InitiatorMethionineBehavior initiatorMethionineBehavior, IEnumerable fixedModifications, IEnumerable variableModifications, int maximumVariableModificationIsoforms, MassTolerance precursorMassTolerance, MassType precursorMassType, IEnumerable acceptedPrecursorMassErrors, MassTolerance productMassTolerance, MassType productMassType, double maximumFalseDiscoveryRate, bool considerModifiedFormsAsUniquePeptides, int maximumThreads, bool minimizeMemoryUsage, string outputFolder ) : System
Search ( ) : void

보호된 메소드들

메소드	설명
OnFinished ( EventArgs e ) : void
OnFinishedFile ( FilepathEventArgs e ) : void
OnReportTaskWithProgress ( EventArgs e ) : void
OnReportTaskWithoutProgress ( EventArgs e ) : void
OnStarting ( EventArgs e ) : void
OnStartingFile ( FilepathEventArgs e ) : void
OnThrowException ( ExceptionEventArgs e ) : void
OnUpdateProgress ( ProgressEventArgs e ) : void
OnUpdateStatus ( StatusEventArgs e ) : void

비공개 메소드들

메소드	설명
DetermineSemiAggregateParentFolders ( ICollection dataFilepaths ) : HashSet>.SortedList
DoSearch ( ) : void
HandleReportTaskWithProgress ( object sender, EventArgs e ) : void
HandleReportTaskWithoutProgress ( object sender, EventArgs e ) : void
HandleUpdateProgress ( object sender, ProgressEventArgs e ) : void

메소드 상세

DatabaseSearcher() 공개 메소드

public DatabaseSearcher ( IList dataFilepaths, int minimumAssumedPrecursorChargeState, int maximumAssumedPrecursorChargeState, double absoluteThreshold, double relativeThresholdPercent, int maximumNumberOfPeaks, bool assignChargeStates, bool deisotope, string proteomeDatabaseFilepath, bool onTheFlyDecoys, Protease protease, int maximumMissedCleavages, InitiatorMethionineBehavior initiatorMethionineBehavior, IEnumerable fixedModifications, IEnumerable variableModifications, int maximumVariableModificationIsoforms, MassTolerance precursorMassTolerance, MassType precursorMassType, IEnumerable acceptedPrecursorMassErrors, MassTolerance productMassTolerance, MassType productMassType, double maximumFalseDiscoveryRate, bool considerModifiedFormsAsUniquePeptides, int maximumThreads, bool minimizeMemoryUsage, string outputFolder ) : System
dataFilepaths	IList
minimumAssumedPrecursorChargeState	int
maximumAssumedPrecursorChargeState	int
absoluteThreshold	double
relativeThresholdPercent	double
maximumNumberOfPeaks	int
assignChargeStates	bool
deisotope	bool
proteomeDatabaseFilepath	string
onTheFlyDecoys	bool
protease	Protease
maximumMissedCleavages	int
initiatorMethionineBehavior	InitiatorMethionineBehavior
fixedModifications	IEnumerable
variableModifications	IEnumerable
maximumVariableModificationIsoforms	int
precursorMassTolerance	MassTolerance
precursorMassType	MassType
acceptedPrecursorMassErrors	IEnumerable
productMassTolerance	MassTolerance
productMassType	MassType
maximumFalseDiscoveryRate	double
considerModifiedFormsAsUniquePeptides	bool
maximumThreads	int
minimizeMemoryUsage	bool
outputFolder	string
리턴	System

OnFinished() 보호된 메소드

protected OnFinished ( EventArgs e ) : void
e	System.EventArgs
리턴	void

OnFinishedFile() 보호된 메소드

protected OnFinishedFile ( FilepathEventArgs e ) : void
e	FilepathEventArgs
리턴	void

OnReportTaskWithProgress() 보호된 메소드

protected OnReportTaskWithProgress ( EventArgs e ) : void
e	System.EventArgs
리턴	void

OnReportTaskWithoutProgress() 보호된 메소드

protected OnReportTaskWithoutProgress ( EventArgs e ) : void
e	System.EventArgs
리턴	void

OnStarting() 보호된 메소드

protected OnStarting ( EventArgs e ) : void
e	System.EventArgs
리턴	void

OnStartingFile() 보호된 메소드

protected OnStartingFile ( FilepathEventArgs e ) : void
e	FilepathEventArgs
리턴	void

OnThrowException() 보호된 메소드

protected OnThrowException ( ExceptionEventArgs e ) : void
e	ExceptionEventArgs
리턴	void

OnUpdateProgress() 보호된 메소드

protected OnUpdateProgress ( ProgressEventArgs e ) : void
e	ProgressEventArgs
리턴	void

OnUpdateStatus() 보호된 메소드

protected OnUpdateStatus ( StatusEventArgs e ) : void
e	StatusEventArgs
리턴	void

Search() 공개 메소드

public Search ( ) : void
리턴	void