C# Class Morpheus.DatabaseSearcher

Afficher le fichier Open project: cwenger/Morpheus Class Usage Examples

Méthodes publiques

Méthode	Description
DatabaseSearcher ( IList dataFilepaths, int minimumAssumedPrecursorChargeState, int maximumAssumedPrecursorChargeState, double absoluteThreshold, double relativeThresholdPercent, int maximumNumberOfPeaks, bool assignChargeStates, bool deisotope, string proteomeDatabaseFilepath, bool onTheFlyDecoys, Protease protease, int maximumMissedCleavages, InitiatorMethionineBehavior initiatorMethionineBehavior, IEnumerable fixedModifications, IEnumerable variableModifications, int maximumVariableModificationIsoforms, MassTolerance precursorMassTolerance, MassType precursorMassType, IEnumerable acceptedPrecursorMassErrors, MassTolerance productMassTolerance, MassType productMassType, double maximumFalseDiscoveryRate, bool considerModifiedFormsAsUniquePeptides, int maximumThreads, bool minimizeMemoryUsage, string outputFolder ) : System
Search ( ) : void

Méthodes protégées

Méthode	Description
OnFinished ( EventArgs e ) : void
OnFinishedFile ( FilepathEventArgs e ) : void
OnReportTaskWithProgress ( EventArgs e ) : void
OnReportTaskWithoutProgress ( EventArgs e ) : void
OnStarting ( EventArgs e ) : void
OnStartingFile ( FilepathEventArgs e ) : void
OnThrowException ( ExceptionEventArgs e ) : void
OnUpdateProgress ( ProgressEventArgs e ) : void
OnUpdateStatus ( StatusEventArgs e ) : void

Private Methods

Méthode	Description
DetermineSemiAggregateParentFolders ( ICollection dataFilepaths ) : HashSet>.SortedList
DoSearch ( ) : void
HandleReportTaskWithProgress ( object sender, EventArgs e ) : void
HandleReportTaskWithoutProgress ( object sender, EventArgs e ) : void
HandleUpdateProgress ( object sender, ProgressEventArgs e ) : void

Method Details

DatabaseSearcher() public méthode

public DatabaseSearcher ( IList dataFilepaths, int minimumAssumedPrecursorChargeState, int maximumAssumedPrecursorChargeState, double absoluteThreshold, double relativeThresholdPercent, int maximumNumberOfPeaks, bool assignChargeStates, bool deisotope, string proteomeDatabaseFilepath, bool onTheFlyDecoys, Protease protease, int maximumMissedCleavages, InitiatorMethionineBehavior initiatorMethionineBehavior, IEnumerable fixedModifications, IEnumerable variableModifications, int maximumVariableModificationIsoforms, MassTolerance precursorMassTolerance, MassType precursorMassType, IEnumerable acceptedPrecursorMassErrors, MassTolerance productMassTolerance, MassType productMassType, double maximumFalseDiscoveryRate, bool considerModifiedFormsAsUniquePeptides, int maximumThreads, bool minimizeMemoryUsage, string outputFolder ) : System
dataFilepaths	IList
minimumAssumedPrecursorChargeState	int
maximumAssumedPrecursorChargeState	int
absoluteThreshold	double
relativeThresholdPercent	double
maximumNumberOfPeaks	int
assignChargeStates	bool
deisotope	bool
proteomeDatabaseFilepath	string
onTheFlyDecoys	bool
protease	Protease
maximumMissedCleavages	int
initiatorMethionineBehavior	InitiatorMethionineBehavior
fixedModifications	IEnumerable
variableModifications	IEnumerable
maximumVariableModificationIsoforms	int
precursorMassTolerance	MassTolerance
precursorMassType	MassType
acceptedPrecursorMassErrors	IEnumerable
productMassTolerance	MassTolerance
productMassType	MassType
maximumFalseDiscoveryRate	double
considerModifiedFormsAsUniquePeptides	bool
maximumThreads	int
minimizeMemoryUsage	bool
outputFolder	string
Résultat	System

OnFinished() protected méthode

protected OnFinished ( EventArgs e ) : void
e	System.EventArgs
Résultat	void

OnFinishedFile() protected méthode

protected OnFinishedFile ( FilepathEventArgs e ) : void
e	FilepathEventArgs
Résultat	void

OnReportTaskWithProgress() protected méthode

protected OnReportTaskWithProgress ( EventArgs e ) : void
e	System.EventArgs
Résultat	void

OnReportTaskWithoutProgress() protected méthode

protected OnReportTaskWithoutProgress ( EventArgs e ) : void
e	System.EventArgs
Résultat	void

OnStarting() protected méthode

protected OnStarting ( EventArgs e ) : void
e	System.EventArgs
Résultat	void

OnStartingFile() protected méthode

protected OnStartingFile ( FilepathEventArgs e ) : void
e	FilepathEventArgs
Résultat	void

OnThrowException() protected méthode

protected OnThrowException ( ExceptionEventArgs e ) : void
e	ExceptionEventArgs
Résultat	void

OnUpdateProgress() protected méthode

protected OnUpdateProgress ( ProgressEventArgs e ) : void
e	ProgressEventArgs
Résultat	void

OnUpdateStatus() protected méthode

protected OnUpdateStatus ( StatusEventArgs e ) : void
e	StatusEventArgs
Résultat	void

Search() public méthode

public Search ( ) : void
Résultat	void