C# Class Coon.Compass.FdrOptimizer.InputFile

Mostra file Open project: dbaileychess/Compass

Public Properties

Property	Type	Description
FdrFilteredPSMs	List
FdrFilteredPeptides	List
PeptideSpectralMatches	List
Peptides	List

Public Methods

Method	Description
GetMedianValue ( List values ) : double
InputFile ( string filePath ) : System
Read ( IList fixedModifications, int numberOfTopHits = 1, bool higherScoresAreBetter = false ) : void
ReducePsms ( IEqualityComparer comparer ) : void
UpdatePsmInformation ( MSDataFile dataFile, bool is2dFDR = true, bool useMedian = true, double evalueThreshold = 1e-3 ) : void

Method Details

GetMedianValue() public static method

public static GetMedianValue ( List values ) : double
values	List
return	double

InputFile() public method

public InputFile ( string filePath ) : System
filePath	string
return	System

Read() public method

public Read ( IList fixedModifications, int numberOfTopHits = 1, bool higherScoresAreBetter = false ) : void
fixedModifications	IList
numberOfTopHits	int
higherScoresAreBetter	bool
return	void

ReducePsms() public method

public ReducePsms ( IEqualityComparer comparer ) : void
comparer	IEqualityComparer
return	void

UpdatePsmInformation() public method

public UpdatePsmInformation ( MSDataFile dataFile, bool is2dFDR = true, bool useMedian = true, double evalueThreshold = 1e-3 ) : void
dataFile	MSDataFile
is2dFDR	bool
useMedian	bool
evalueThreshold	double
return	void

Property Details

FdrFilteredPSMs public_oe property

public List FdrFilteredPSMs
return	List

FdrFilteredPeptides public_oe property

public List FdrFilteredPeptides
return	List

PeptideSpectralMatches public_oe property

public List PeptideSpectralMatches
return	List

Peptides public_oe property

public List Peptides
return	List