C# Class Coon.Compass.FdrOptimizer.InputFile

Show file Open project: dbaileychess/Compass

Public Properties

Property	Type	Description
FdrFilteredPSMs	List
FdrFilteredPeptides	List
PeptideSpectralMatches	List
Peptides	List

Public Methods

Method	Description
GetMedianValue ( List values ) : double
InputFile ( string filePath ) : System
Read ( IList fixedModifications, int numberOfTopHits = 1, bool higherScoresAreBetter = false ) : void
ReducePsms ( IEqualityComparer comparer ) : void
UpdatePsmInformation ( MSDataFile dataFile, bool is2dFDR = true, bool useMedian = true, double evalueThreshold = 1e-3 ) : void

Method Details

GetMedianValue() public static method

public static GetMedianValue ( List values ) : double
values	List
return	double

InputFile() public method

public InputFile ( string filePath ) : System
filePath	string
return	System

Read() public method

public Read ( IList fixedModifications, int numberOfTopHits = 1, bool higherScoresAreBetter = false ) : void
fixedModifications	IList
numberOfTopHits	int
higherScoresAreBetter	bool
return	void

ReducePsms() public method

public ReducePsms ( IEqualityComparer comparer ) : void
comparer	IEqualityComparer
return	void

UpdatePsmInformation() public method

public UpdatePsmInformation ( MSDataFile dataFile, bool is2dFDR = true, bool useMedian = true, double evalueThreshold = 1e-3 ) : void
dataFile	MSDataFile
is2dFDR	bool
useMedian	bool
evalueThreshold	double
return	void

Property Details

FdrFilteredPSMs public property

public List FdrFilteredPSMs
return	List

FdrFilteredPeptides public property

public List FdrFilteredPeptides
return	List

PeptideSpectralMatches public property

public List PeptideSpectralMatches
return	List

Peptides public property

public List Peptides
return	List