C# Class Coon.Compass.TagQuant.TagQuant

Afficher le fichier Open project: dbaileychess/Compass Class Usage Examples

Méthodes publiques

Свойство	Type	Description
CalculatePurity	bool
DontQuantifyETD	bool
ETDQuantPosition	int
FtMassTolerance	CSMSL.Tolerance
InputFiles	List
ItMassTolerance	CSMSL.Tolerance
MS3Quant	bool
NoisebandCap	bool
OutputDirectory	string
PurityMatrices	IsobaricTagPurityCorrection>.Dictionary
PurityWindowInTh	double
RawFileDirectory	string
RawFiles	ThermoRawFile>.Dictionary
UsedTags	TagInformation>.SortedList

Méthodes publiques

Méthode	Description
Run ( ) : void
TagQuant ( string outputDirectory, string rawFileDirectory, IEnumerable inputFiles, IEnumerable tags, Tolerance itTolerance, Tolerance ftTolerance, bool isMS3Quant = false, int etdQuantPosition, bool nosiebasecap = false, bool isETDQuantified = true, bool calculatePurity = false ) : System

Méthodes protégées

Méthode	Description
OnUpdateLog ( string message ) : void

Private Methods

Méthode	Description
BuildPurityMatrixes ( IEnumerable inputTags ) : void
DeterminePurity ( MSDataScan scan, double mz, int charge, DoubleRange isolationRange ) : double
LoadFiles ( IEnumerable filePaths, bool ms3Quant = false ) : IEnumerable
Log ( string msg ) : void
Normalize ( IEnumerable quantFiles ) : void
OnProgressUpdate ( int percent ) : void
PurityCorrect ( IEnumerable peaks, bool isDecoy ) : void
WriteLog ( ) : void
WriteOutputFiles ( IEnumerable quantFiles ) : void

Method Details

OnUpdateLog() protected méthode

protected OnUpdateLog ( string message ) : void
message	string
Résultat	void

Run() public méthode

public Run ( ) : void
Résultat	void

TagQuant() public méthode

public TagQuant ( string outputDirectory, string rawFileDirectory, IEnumerable inputFiles, IEnumerable tags, Tolerance itTolerance, Tolerance ftTolerance, bool isMS3Quant = false, int etdQuantPosition, bool nosiebasecap = false, bool isETDQuantified = true, bool calculatePurity = false ) : System
outputDirectory	string
rawFileDirectory	string
inputFiles	IEnumerable
tags	IEnumerable
itTolerance	CSMSL.Tolerance
ftTolerance	CSMSL.Tolerance
isMS3Quant	bool
etdQuantPosition	int
nosiebasecap	bool
isETDQuantified	bool
calculatePurity	bool
Résultat	System

Property Details

CalculatePurity public_oe property

public bool CalculatePurity
Résultat	bool

DontQuantifyETD public_oe property

public bool DontQuantifyETD
Résultat	bool

ETDQuantPosition public_oe property

public int ETDQuantPosition
Résultat	int

FtMassTolerance public_oe property

public Tolerance,CSMSL FtMassTolerance
Résultat	CSMSL.Tolerance

InputFiles public_oe property

public List InputFiles
Résultat	List

ItMassTolerance public_oe property

public Tolerance,CSMSL ItMassTolerance
Résultat	CSMSL.Tolerance

MS3Quant public_oe property

public bool MS3Quant
Résultat	bool

NoisebandCap public_oe property

public bool NoisebandCap
Résultat	bool

OutputDirectory public_oe property

public string OutputDirectory
Résultat	string

PurityMatrices public_oe property

public Dictionary PurityMatrices
Résultat	IsobaricTagPurityCorrection>.Dictionary

PurityWindowInTh public_oe property

public double PurityWindowInTh
Résultat	double

RawFileDirectory public_oe property

public string RawFileDirectory
Résultat	string

RawFiles public_oe property

public Dictionary RawFiles
Résultat	ThermoRawFile>.Dictionary

UsedTags public_oe property

public SortedList UsedTags
Résultat	TagInformation>.SortedList