C# Class BatchFdrOptimizer.PeptideHit

Afficher le fichier Open project: dbaileychess/Compass Class Usage Examples

Protected Properties

Свойство Type Description
adjustedPrecursorMassError double
decoy bool
dynamicModifications string
eValueScore double
experimentalNeutralMass double
isolationMZ double
isolationMass double
precursorMassError double
qValue double
sequence string
theoreticalNeutralMass double

Méthodes publiques

Méthode Description
PeptideHit ( string sequence, string dynamicModifications, double eValueScore, bool decoy, Peptide peptide, IXRawfile2 raw, int scanNumber, int firstScanNumber, int charge ) : System
PeptideHit ( string sequence, string dynamicModifications, double eValueScore, bool decoy, double isolationMZ, double isolationMass, double theoreticalNeutralMass, double experimentalNeutralMass, double precursorMassError, double adjustedPrecursorMassError, double qValue ) : System

Méthodes protégées

Méthode Description
CalculatePrecursorMassError ( IXRawfile2 raw, int scanNumber, int firstScanNumber, int charge ) : void
MZFromMassAndCharge ( double mass, int charge ) : double
MassFromMZAndCharge ( double mz, int charge ) : double

Method Details

CalculatePrecursorMassError() protected méthode

protected CalculatePrecursorMassError ( IXRawfile2 raw, int scanNumber, int firstScanNumber, int charge ) : void
raw IXRawfile2
scanNumber int
firstScanNumber int
charge int
Résultat void

MZFromMassAndCharge() protected static méthode

protected static MZFromMassAndCharge ( double mass, int charge ) : double
mass double
charge int
Résultat double

MassFromMZAndCharge() protected static méthode

protected static MassFromMZAndCharge ( double mz, int charge ) : double
mz double
charge int
Résultat double

PeptideHit() public méthode

public PeptideHit ( string sequence, string dynamicModifications, double eValueScore, bool decoy, Peptide peptide, IXRawfile2 raw, int scanNumber, int firstScanNumber, int charge ) : System
sequence string
dynamicModifications string
eValueScore double
decoy bool
peptide Peptide
raw IXRawfile2
scanNumber int
firstScanNumber int
charge int
Résultat System

PeptideHit() public méthode

public PeptideHit ( string sequence, string dynamicModifications, double eValueScore, bool decoy, double isolationMZ, double isolationMass, double theoreticalNeutralMass, double experimentalNeutralMass, double precursorMassError, double adjustedPrecursorMassError, double qValue ) : System
sequence string
dynamicModifications string
eValueScore double
decoy bool
isolationMZ double
isolationMass double
theoreticalNeutralMass double
experimentalNeutralMass double
precursorMassError double
adjustedPrecursorMassError double
qValue double
Résultat System

Property Details

adjustedPrecursorMassError protected_oe property

protected double adjustedPrecursorMassError
Résultat double

decoy protected_oe property

protected bool decoy
Résultat bool

dynamicModifications protected_oe property

protected string dynamicModifications
Résultat string

eValueScore protected_oe property

protected double eValueScore
Résultat double

experimentalNeutralMass protected_oe property

protected double experimentalNeutralMass
Résultat double

isolationMZ protected_oe property

protected double isolationMZ
Résultat double

isolationMass protected_oe property

protected double isolationMass
Résultat double

precursorMassError protected_oe property

protected double precursorMassError
Résultat double

qValue protected_oe property

protected double qValue
Résultat double

sequence protected_oe property

protected string sequence
Résultat string

theoreticalNeutralMass protected_oe property

protected double theoreticalNeutralMass
Résultat double