C# Class BatchFdrOptimizer.PeptideHit

Datei anzeigen Open project: dbaileychess/Compass Class Usage Examples

Protected Properties

Property	Type	Description
adjustedPrecursorMassError	double
decoy	bool
dynamicModifications	string
eValueScore	double
experimentalNeutralMass	double
isolationMZ	double
isolationMass	double
precursorMassError	double
qValue	double
sequence	string
theoreticalNeutralMass	double

Public Methods

Method	Description
PeptideHit ( string sequence, string dynamicModifications, double eValueScore, bool decoy, Peptide peptide, IXRawfile2 raw, int scanNumber, int firstScanNumber, int charge ) : System
PeptideHit ( string sequence, string dynamicModifications, double eValueScore, bool decoy, double isolationMZ, double isolationMass, double theoreticalNeutralMass, double experimentalNeutralMass, double precursorMassError, double adjustedPrecursorMassError, double qValue ) : System

Protected Methods

Method	Description
CalculatePrecursorMassError ( IXRawfile2 raw, int scanNumber, int firstScanNumber, int charge ) : void
MZFromMassAndCharge ( double mass, int charge ) : double
MassFromMZAndCharge ( double mz, int charge ) : double

Method Details

CalculatePrecursorMassError() protected method

protected CalculatePrecursorMassError ( IXRawfile2 raw, int scanNumber, int firstScanNumber, int charge ) : void
raw	IXRawfile2
scanNumber	int
firstScanNumber	int
charge	int
return	void

MZFromMassAndCharge() protected static method

protected static MZFromMassAndCharge ( double mass, int charge ) : double
mass	double
charge	int
return	double

MassFromMZAndCharge() protected static method

protected static MassFromMZAndCharge ( double mz, int charge ) : double
mz	double
charge	int
return	double

PeptideHit() public method

public PeptideHit ( string sequence, string dynamicModifications, double eValueScore, bool decoy, Peptide peptide, IXRawfile2 raw, int scanNumber, int firstScanNumber, int charge ) : System
sequence	string
dynamicModifications	string
eValueScore	double
decoy	bool
peptide	Peptide
raw	IXRawfile2
scanNumber	int
firstScanNumber	int
charge	int
return	System

PeptideHit() public method

public PeptideHit ( string sequence, string dynamicModifications, double eValueScore, bool decoy, double isolationMZ, double isolationMass, double theoreticalNeutralMass, double experimentalNeutralMass, double precursorMassError, double adjustedPrecursorMassError, double qValue ) : System
sequence	string
dynamicModifications	string
eValueScore	double
decoy	bool
isolationMZ	double
isolationMass	double
theoreticalNeutralMass	double
experimentalNeutralMass	double
precursorMassError	double
adjustedPrecursorMassError	double
qValue	double
return	System

Property Details

adjustedPrecursorMassError protected_oe property

protected double adjustedPrecursorMassError
return	double

decoy protected_oe property

protected bool decoy
return	bool

dynamicModifications protected_oe property

protected string dynamicModifications
return	string

eValueScore protected_oe property

protected double eValueScore
return	double

experimentalNeutralMass protected_oe property

protected double experimentalNeutralMass
return	double

isolationMZ protected_oe property

protected double isolationMZ
return	double

isolationMass protected_oe property

protected double isolationMass
return	double

precursorMassError protected_oe property

protected double precursorMassError
return	double

qValue protected_oe property

protected double qValue
return	double

sequence protected_oe property

protected string sequence
return	string

theoreticalNeutralMass protected_oe property

protected double theoreticalNeutralMass
return	double