C# Class Coon.Compass.DatabaseMaker.DatabaseMaker

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Public Properties

Property	Type	Description
LOG_FILENAME	string
MAKEBLASTDB_FILENAME	string

Public Methods

Method	Description
CreateDatabase ( ) : void
DatabaseMaker ( DatabaseMakerOptions options ) : System
DisplayVerboseOptions ( bool verboseOptions, DatabaseMakerOptions Options ) : void
MakeBlastDatabase ( string outputfolder, string infile, string outfile ) : void
WriteFasta ( string fasta_file, FastaWriter Writer ) : void

Private Methods

Method	Description
GenerateLog ( string outputDirectory, string logFileName = "DatabaseMaker.log" ) : void	Generates a log file detailing the parameters used
InvalidHeader ( Fasta fasta ) : void

Method Details

CreateDatabase() public method

public CreateDatabase ( ) : void
return	void

DatabaseMaker() public method

public DatabaseMaker ( DatabaseMakerOptions options ) : System
options	DatabaseMakerOptions
return	System

DisplayVerboseOptions() public method

public DisplayVerboseOptions ( bool verboseOptions, DatabaseMakerOptions Options ) : void
verboseOptions	bool
Options	DatabaseMakerOptions
return	void

MakeBlastDatabase() public static method

public static MakeBlastDatabase ( string outputfolder, string infile, string outfile ) : void
outputfolder	string
infile	string
outfile	string
return	void

WriteFasta() public method

public WriteFasta ( string fasta_file, FastaWriter Writer ) : void
fasta_file	string
Writer	CSMSL.IO.FastaWriter
return	void

Property Details

LOG_FILENAME public static property

public static string LOG_FILENAME
return	string

MAKEBLASTDB_FILENAME public static property

public static string MAKEBLASTDB_FILENAME
return	string