C# Класс Morpheus.ProteomeDatabaseReader

Показать файл Открыть проект

Открытые методы

Метод	Описание
CountProteins ( FileStream proteomeDatabase, bool onTheFlyDecoys, int &targetProteins, int &decoyProteins, int &onTheFlyDecoyProteins ) : int
HasDecoyProteins ( string fastaProteomeDatabaseFilepath ) : bool
ReadProteins ( FileStream proteomeDatabase, bool onTheFlyDecoys, Modification>.IDictionary knownVariableModifications ) : IEnumerable
ReadUniProtXmlModifications ( string uniProtXmlProteomeDatabaseFilepath ) : Modification>.Dictionary

Приватные методы

Метод	Описание
CountFastaProteins ( FileStream fastaProteomeDatabase, bool onTheFlyDecoys, int &targetProteins, int &decoyProteins, int &onTheFlyDecoyProteins ) : int
CountUniProtXmlProteins ( FileStream uniProtXmlProteomeDatabase, bool onTheFlyDecoys, int &targetProteins, int &decoyProteins, int &onTheFlyDecoyProteins ) : int
InitializeDictionaries ( ) : void
ReadFastaProteins ( FileStream fastaProteomeDatabase, bool onTheFlyDecoys ) : IEnumerable
ReadUniProtXmlProteins ( FileStream uniProtXmlProteomeDatabase, bool onTheFlyDecoys, Modification>.IDictionary knownVariableModifications ) : IEnumerable

Описание методов

CountProteins() публичный статический Метод

public static CountProteins ( FileStream proteomeDatabase, bool onTheFlyDecoys, int &targetProteins, int &decoyProteins, int &onTheFlyDecoyProteins ) : int
proteomeDatabase	System.IO.FileStream
onTheFlyDecoys	bool
targetProteins	int
decoyProteins	int
onTheFlyDecoyProteins	int
Результат	int

HasDecoyProteins() публичный статический Метод

public static HasDecoyProteins ( string fastaProteomeDatabaseFilepath ) : bool
fastaProteomeDatabaseFilepath	string
Результат	bool

ReadProteins() публичный статический Метод

public static ReadProteins ( FileStream proteomeDatabase, bool onTheFlyDecoys, Modification>.IDictionary knownVariableModifications ) : IEnumerable
proteomeDatabase	System.IO.FileStream
onTheFlyDecoys	bool
knownVariableModifications	Modification>.IDictionary
Результат	IEnumerable

ReadUniProtXmlModifications() публичный статический Метод

public static ReadUniProtXmlModifications ( string uniProtXmlProteomeDatabaseFilepath ) : Modification>.Dictionary
uniProtXmlProteomeDatabaseFilepath	string
Результат	Modification>.Dictionary