C# Класс Morpheus.ProteomeDatabaseReader

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Открытые методы

Метод Описание
CountProteins ( FileStream proteomeDatabase, bool onTheFlyDecoys, int &targetProteins, int &decoyProteins, int &onTheFlyDecoyProteins ) : int
HasDecoyProteins ( string fastaProteomeDatabaseFilepath ) : bool
ReadProteins ( FileStream proteomeDatabase, bool onTheFlyDecoys, Modification>.IDictionary knownVariableModifications ) : IEnumerable
ReadUniProtXmlModifications ( string uniProtXmlProteomeDatabaseFilepath ) : Modification>.Dictionary

Приватные методы

Метод Описание
CountFastaProteins ( FileStream fastaProteomeDatabase, bool onTheFlyDecoys, int &targetProteins, int &decoyProteins, int &onTheFlyDecoyProteins ) : int
CountUniProtXmlProteins ( FileStream uniProtXmlProteomeDatabase, bool onTheFlyDecoys, int &targetProteins, int &decoyProteins, int &onTheFlyDecoyProteins ) : int
InitializeDictionaries ( ) : void
ReadFastaProteins ( FileStream fastaProteomeDatabase, bool onTheFlyDecoys ) : IEnumerable
ReadUniProtXmlProteins ( FileStream uniProtXmlProteomeDatabase, bool onTheFlyDecoys, Modification>.IDictionary knownVariableModifications ) : IEnumerable

Описание методов

CountProteins() публичный статический Метод

public static CountProteins ( FileStream proteomeDatabase, bool onTheFlyDecoys, int &targetProteins, int &decoyProteins, int &onTheFlyDecoyProteins ) : int
proteomeDatabase System.IO.FileStream
onTheFlyDecoys bool
targetProteins int
decoyProteins int
onTheFlyDecoyProteins int
Результат int

HasDecoyProteins() публичный статический Метод

public static HasDecoyProteins ( string fastaProteomeDatabaseFilepath ) : bool
fastaProteomeDatabaseFilepath string
Результат bool

ReadProteins() публичный статический Метод

public static ReadProteins ( FileStream proteomeDatabase, bool onTheFlyDecoys, Modification>.IDictionary knownVariableModifications ) : IEnumerable
proteomeDatabase System.IO.FileStream
onTheFlyDecoys bool
knownVariableModifications Modification>.IDictionary
Результат IEnumerable

ReadUniProtXmlModifications() публичный статический Метод

public static ReadUniProtXmlModifications ( string uniProtXmlProteomeDatabaseFilepath ) : Modification>.Dictionary
uniProtXmlProteomeDatabaseFilepath string
Результат Modification>.Dictionary