C# 클래스 Morpheus.ProteomeDatabaseReader

파일 보기 프로젝트 열기: cwenger/Morpheus

공개 메소드들

메소드	설명
CountProteins ( FileStream proteomeDatabase, bool onTheFlyDecoys, int &targetProteins, int &decoyProteins, int &onTheFlyDecoyProteins ) : int
HasDecoyProteins ( string fastaProteomeDatabaseFilepath ) : bool
ReadProteins ( FileStream proteomeDatabase, bool onTheFlyDecoys, Modification>.IDictionary knownVariableModifications ) : IEnumerable
ReadUniProtXmlModifications ( string uniProtXmlProteomeDatabaseFilepath ) : Modification>.Dictionary

비공개 메소드들

메소드	설명
CountFastaProteins ( FileStream fastaProteomeDatabase, bool onTheFlyDecoys, int &targetProteins, int &decoyProteins, int &onTheFlyDecoyProteins ) : int
CountUniProtXmlProteins ( FileStream uniProtXmlProteomeDatabase, bool onTheFlyDecoys, int &targetProteins, int &decoyProteins, int &onTheFlyDecoyProteins ) : int
InitializeDictionaries ( ) : void
ReadFastaProteins ( FileStream fastaProteomeDatabase, bool onTheFlyDecoys ) : IEnumerable
ReadUniProtXmlProteins ( FileStream uniProtXmlProteomeDatabase, bool onTheFlyDecoys, Modification>.IDictionary knownVariableModifications ) : IEnumerable

메소드 상세

CountProteins() 공개 정적인 메소드

public static CountProteins ( FileStream proteomeDatabase, bool onTheFlyDecoys, int &targetProteins, int &decoyProteins, int &onTheFlyDecoyProteins ) : int
proteomeDatabase	System.IO.FileStream
onTheFlyDecoys	bool
targetProteins	int
decoyProteins	int
onTheFlyDecoyProteins	int
리턴	int

HasDecoyProteins() 공개 정적인 메소드

public static HasDecoyProteins ( string fastaProteomeDatabaseFilepath ) : bool
fastaProteomeDatabaseFilepath	string
리턴	bool

ReadProteins() 공개 정적인 메소드

public static ReadProteins ( FileStream proteomeDatabase, bool onTheFlyDecoys, Modification>.IDictionary knownVariableModifications ) : IEnumerable
proteomeDatabase	System.IO.FileStream
onTheFlyDecoys	bool
knownVariableModifications	Modification>.IDictionary
리턴	IEnumerable

ReadUniProtXmlModifications() 공개 정적인 메소드

public static ReadUniProtXmlModifications ( string uniProtXmlProteomeDatabaseFilepath ) : Modification>.Dictionary
uniProtXmlProteomeDatabaseFilepath	string
리턴	Modification>.Dictionary