C# Класс Coon.Compass.Procyon.QuantFile

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Открытые методы

Метод	Описание
AddComparison ( Comparison comparison, ValueType typeOfValue ) : void
GroupQuantData ( ) : void
MulitpleComparisonCorrection ( string multCompString, string thresholdTypeString, double sigThreshold ) : void
NormalizeDataSet ( bool noNormalize, bool sumNormalize, bool medianNormalize, string uniprotHeader, string normalizationString, List uniprotListForNormalization ) : void
PerformSignificanceTest ( string sigTestingString, double sigThreshold, ValueType typeOfValue ) : void
QuantFile ( List quantFiles, string>.Dictionary fileNameAndHeadertoUniqueGroupName ) : System
QuantFile ( string fileLocation, List quantHeaders ) : System
TestAnnotationEnrichment ( string annotationString, List annotationsToAdd, AnnotationEntry>.Dictionary annotationEntryDict, Dictionary uniprotToAnnotationList, double annotationSigThreshold ) : void

Приватные методы

Метод	Описание
AnnotateQuantEntries ( string annotationString, List annotationsToAdd, AnnotationEntry>.Dictionary annotationEntryDict, Dictionary uniprotToAnnotationList ) : void
ApplyNormalizationFactors ( ) : void
BenjaminiHochberg ( double>.Dictionary pvalueDict ) : double>.Dictionary
CreateAnnotationCountDict ( Dictionary annotationQuantListDict ) : Dictionary>
DoNotNormalizeDataSet ( Dictionary normalizationSubset ) : void
FisherExactTest ( int>.Dictionary background, int>.Dictionary test ) : double>.Dictionary
ListSignificantChangingQuantEntries ( List annotationsToAdd, Comparison comparison, string sigType, List quantEntries ) : List>.Dictionary
MedianNormalizeDataSet ( Dictionary normalizationSubset ) : void
SumNormalizeDataSet ( Dictionary normalizationSubset ) : void
TestForEnrichment ( int>.Dictionary backgroundDict, int>.Dictionary testDict, double annotationSigThreshold ) : Dictionary>

Описание методов

AddComparison() публичный Метод

public AddComparison ( Comparison comparison, ValueType typeOfValue ) : void
comparison	Comparison
typeOfValue	System.ValueType
Результат	void

GroupQuantData() публичный Метод

public GroupQuantData ( ) : void
Результат	void

MulitpleComparisonCorrection() публичный Метод

public MulitpleComparisonCorrection ( string multCompString, string thresholdTypeString, double sigThreshold ) : void
multCompString	string
thresholdTypeString	string
sigThreshold	double
Результат	void

NormalizeDataSet() публичный Метод

public NormalizeDataSet ( bool noNormalize, bool sumNormalize, bool medianNormalize, string uniprotHeader, string normalizationString, List uniprotListForNormalization ) : void
noNormalize	bool
sumNormalize	bool
medianNormalize	bool
uniprotHeader	string
normalizationString	string
uniprotListForNormalization	List
Результат	void

PerformSignificanceTest() публичный Метод

public PerformSignificanceTest ( string sigTestingString, double sigThreshold, ValueType typeOfValue ) : void
sigTestingString	string
sigThreshold	double
typeOfValue	System.ValueType
Результат	void

QuantFile() публичный Метод

public QuantFile ( List quantFiles, string>.Dictionary fileNameAndHeadertoUniqueGroupName ) : System
quantFiles	List
fileNameAndHeadertoUniqueGroupName	string>.Dictionary
Результат	System

QuantFile() публичный Метод

public QuantFile ( string fileLocation, List quantHeaders ) : System
fileLocation	string
quantHeaders	List
Результат	System

TestAnnotationEnrichment() публичный Метод

public TestAnnotationEnrichment ( string annotationString, List annotationsToAdd, AnnotationEntry>.Dictionary annotationEntryDict, Dictionary uniprotToAnnotationList, double annotationSigThreshold ) : void
annotationString	string
annotationsToAdd	List
annotationEntryDict	AnnotationEntry>.Dictionary
uniprotToAnnotationList	Dictionary
annotationSigThreshold	double
Результат	void