Method | Description | |
---|---|---|
AddComparison ( |
||
GroupQuantData ( ) : void | ||
MulitpleComparisonCorrection ( string multCompString, string thresholdTypeString, double sigThreshold ) : void | ||
NormalizeDataSet ( bool noNormalize, bool sumNormalize, bool medianNormalize, string uniprotHeader, string normalizationString, List |
||
PerformSignificanceTest ( string sigTestingString, double sigThreshold, |
||
QuantFile ( List |
||
QuantFile ( string fileLocation, List |
||
TestAnnotationEnrichment ( string annotationString, List |
Method | Description | |
---|---|---|
AnnotateQuantEntries ( string annotationString, List |
||
ApplyNormalizationFactors ( ) : void | ||
BenjaminiHochberg ( double>.Dictionary |
||
CreateAnnotationCountDict ( Dictionary |
||
DoNotNormalizeDataSet ( Dictionary |
||
FisherExactTest ( int>.Dictionary |
||
ListSignificantChangingQuantEntries ( List |
||
MedianNormalizeDataSet ( Dictionary |
||
SumNormalizeDataSet ( Dictionary |
||
TestForEnrichment ( int>.Dictionary |
public AddComparison ( |
||
comparison | ||
typeOfValue | ||
return | void |
public MulitpleComparisonCorrection ( string multCompString, string thresholdTypeString, double sigThreshold ) : void | ||
multCompString | string | |
thresholdTypeString | string | |
sigThreshold | double | |
return | void |
public NormalizeDataSet ( bool noNormalize, bool sumNormalize, bool medianNormalize, string uniprotHeader, string normalizationString, List |
||
noNormalize | bool | |
sumNormalize | bool | |
medianNormalize | bool | |
uniprotHeader | string | |
normalizationString | string | |
uniprotListForNormalization | List |
|
return | void |
public PerformSignificanceTest ( string sigTestingString, double sigThreshold, |
||
sigTestingString | string | |
sigThreshold | double | |
typeOfValue | ||
return | void |
public QuantFile ( List |
||
quantFiles | List |
|
fileNameAndHeadertoUniqueGroupName | string>.Dictionary | |
return | System |
public QuantFile ( string fileLocation, List |
||
fileLocation | string | |
quantHeaders | List |
|
return | System |
public TestAnnotationEnrichment ( string annotationString, List |
||
annotationString | string | |
annotationsToAdd | List |
|
annotationEntryDict | AnnotationEntry>.Dictionary | |
uniprotToAnnotationList | Dictionary |
|
annotationSigThreshold | double | |
return | void |