C# Class PromoterReaction, Hero.Coli

Inheritance: IReaction

Exibir arquivo Open project: CyberCRI/Hero.Coli Class Usage Examples

Protected Properties

Property	Type	Description
_beta	float

Public Methods

Method	Description
PromoterReaction ( ) : System.Collections.Generic
PromoterReaction ( PromoterReaction, r ) : System.Collections.Generic
ToString ( ) : string
buildPromoterFromProps ( PromoterProperties, props ) : IReaction,
getBeta ( ) : float
getFormula ( ) : TreeNode
getTerminatorFactor ( ) : float
hasValidData ( ) : bool
hillFunc ( float K, float concentration, double n ) : float
react ( ArrayList molecules ) : void
setBeta ( float beta ) : void
setFormula ( TreeNode tree ) : void
setTerminatorFactor ( float v ) : void
stepFunc ( float K, float concentration ) : float
tryInstantiateFromXml ( XmlNode node ) : bool

Protected Methods

Method	Description
PartialEquals ( IReaction, reaction ) : bool

Private Methods

Method	Description
execBool ( TreeNode node ) : float
execConstant ( TreeNode node, ArrayList molecules ) : float
execNode ( TreeNode node, ArrayList molecules ) : float
execNum ( TreeNode node, ArrayList molecules ) : float
execWord ( TreeNode node, ArrayList molecules ) : Molecule,
formulaEquals ( TreeNode formula1, TreeNode formula2 ) : bool
loadEnergyCost ( string value ) : bool
loadGene ( string name, string RBSf ) : bool
loadPromoterFormula ( string formula ) : bool
loadPromoterName ( string value ) : bool
loadPromoterOperon ( XmlNode node ) : bool
loadPromoterProductionMax ( string value ) : bool
loadPromoterTerminatorFactor ( string value ) : bool

Method Details

PartialEquals() protected method

protected PartialEquals ( IReaction, reaction ) : bool
reaction	IReaction,
return	bool

PromoterReaction() public method

public PromoterReaction ( ) : System.Collections.Generic
return	System.Collections.Generic

PromoterReaction() public method

public PromoterReaction ( PromoterReaction, r ) : System.Collections.Generic
r	PromoterReaction,
return	System.Collections.Generic

ToString() public method

public ToString ( ) : string
return	string

buildPromoterFromProps() public static method

public static buildPromoterFromProps ( PromoterProperties, props ) : IReaction,
props	PromoterProperties,
return	IReaction,

getBeta() public method

public getBeta ( ) : float
return	float

getFormula() public method

public getFormula ( ) : TreeNode
return	TreeNode

getTerminatorFactor() public method

public getTerminatorFactor ( ) : float
return	float

hasValidData() public method

public hasValidData ( ) : bool
return	bool

hillFunc() public static method

public static hillFunc ( float K, float concentration, double n ) : float
K	float
concentration	float
n	double
return	float

react() public method

public react ( ArrayList molecules ) : void
molecules	ArrayList
return	void

setBeta() public method

public setBeta ( float beta ) : void
beta	float
return	void

setFormula() public method

public setFormula ( TreeNode tree ) : void
tree	TreeNode
return	void

setTerminatorFactor() public method

public setTerminatorFactor ( float v ) : void
v	float
return	void

stepFunc() public static method

public static stepFunc ( float K, float concentration ) : float
K	float
concentration	float
return	float

tryInstantiateFromXml() public method

public tryInstantiateFromXml ( XmlNode node ) : bool
node	XmlNode
return	bool

Property Details

_beta protected_oe property

protected float _beta
return	float