C# Class natix.CompactDS.SeqCSA

Inheritance: ITextIndex

Mostra file Open project: sadit/natix

Public Properties

Property	Type	Description
SA_invsamples	ListIFS
SA_marked	Bitmap
SA_sample_step	short
SA_samples	ListIFS
SeqPsi	Sequence
charT	int[]
newF	Bitmap

Private Properties

Property	Type	Description
GetCharId	int
_get_suffix_lazy	IList
_lex_cmp	int

Public Methods

Method	Description
Build ( string sa_name, SequenceBuilder seq_builder = null, BitmapFromBitStream bitmap_builder = null ) : void
CountOcc ( IList query ) : int
Extract ( int start_pos, int len ) : IList
GetPsi ( int pos ) : int
GetSuffix ( IList Output, int suffix_index, int len ) : IList
GetSuffixLazy ( int suffix_index, int len ) : IEnumerable
GetText ( IList Output ) : IList
Load ( string basename ) : void
Locate ( IList query ) : IList
Locate ( int suffix ) : int
Save ( string basename ) : void
Search ( IList query, int &start_pos, int &end_pos ) : bool
SeqCSA ( ) : System

Private Methods

Method	Description
GetCharId ( int c ) : int
_get_suffix_lazy ( int suffix ) : IList
_lex_cmp ( IList a, IList b ) : int

Method Details

Build() public method

public Build ( string sa_name, SequenceBuilder seq_builder = null, BitmapFromBitStream bitmap_builder = null ) : void
sa_name	string
seq_builder	SequenceBuilder
bitmap_builder	BitmapFromBitStream
return	void

CountOcc() public method

public CountOcc ( IList query ) : int
query	IList
return	int

Extract() public method

public Extract ( int start_pos, int len ) : IList
start_pos	int
len	int
return	IList

GetPsi() public method

public GetPsi ( int pos ) : int
pos	int
return	int

GetSuffix() public method

public GetSuffix ( IList Output, int suffix_index, int len ) : IList
Output	IList
suffix_index	int
len	int
return	IList

GetSuffixLazy() public method

public GetSuffixLazy ( int suffix_index, int len ) : IEnumerable
suffix_index	int
len	int
return	IEnumerable

GetText() public method

public GetText ( IList Output ) : IList
Output	IList
return	IList

Load() public method

public Load ( string basename ) : void
basename	string
return	void

Locate() public method

public Locate ( IList query ) : IList
query	IList
return	IList

Locate() public method

public Locate ( int suffix ) : int
suffix	int
return	int

Save() public method

public Save ( string basename ) : void
basename	string
return	void

Search() public method

public Search ( IList query, int &start_pos, int &end_pos ) : bool
query	IList
start_pos	int
end_pos	int
return	bool

SeqCSA() public method

public SeqCSA ( ) : System
return	System

Property Details

SA_invsamples public_oe property

public ListIFS SA_invsamples
return	ListIFS

SA_marked public_oe property

public Bitmap,natix.CompactDS SA_marked
return	Bitmap

SA_sample_step public_oe property

public short SA_sample_step
return	short

SA_samples public_oe property

public ListIFS SA_samples
return	ListIFS

SeqPsi public_oe property

public Sequence SeqPsi
return	Sequence

charT public_oe property

public int[] charT
return	int[]

newF public_oe property

public Bitmap newF
return	Bitmap