C# Class CSMSL.IO.PepXML.PepXmlWriter

Inheritance: IDisposable

Mostra file Open project: dbaileychess/CSMSL Class Usage Examples

Public Methods

Method	Description
Dispose ( ) : void
EndSpectrum ( ) : void
PepXmlWriter ( string filePath ) : System
SetCurrentStage ( Stage stage, bool endPreviousStage = true ) : void
StartSearchSummary ( string searchEngine, bool isPrecursorMassMonoisotopic, bool isProductMassMonoisotopic ) : void
StartSpectrum ( int spectrumNumbner, double rt, double precursorNeutralMass, int chargeState, string title = "" ) : void
WriteComment ( string comment ) : void
WriteModification ( IMass modification, ModificationSites sites, bool fixedModification = true ) : void
WritePSM ( PeptideSpectralMatch psm, int hitRank = 1 ) : void
WriteParameter ( string name, string value ) : void
WriteProteinDatabase ( string fastaFilePath, string name = "", string releaseDate = "" ) : void
WriteSampleProtease ( Protease protease ) : void
WriteSearchProtease ( Protease protease, int maxMissedClevages, bool semiDigested = false ) : void

Method Details

Dispose() public method

public Dispose ( ) : void
return	void

EndSpectrum() public method

public EndSpectrum ( ) : void
return	void

PepXmlWriter() public method

public PepXmlWriter ( string filePath ) : System
filePath	string
return	System

SetCurrentStage() public method

public SetCurrentStage ( Stage stage, bool endPreviousStage = true ) : void
stage	Stage
endPreviousStage	bool
return	void

StartSearchSummary() public method

public StartSearchSummary ( string searchEngine, bool isPrecursorMassMonoisotopic, bool isProductMassMonoisotopic ) : void
searchEngine	string
isPrecursorMassMonoisotopic	bool
isProductMassMonoisotopic	bool
return	void

StartSpectrum() public method

public StartSpectrum ( int spectrumNumbner, double rt, double precursorNeutralMass, int chargeState, string title = "" ) : void
spectrumNumbner	int
rt	double
precursorNeutralMass	double
chargeState	int
title	string
return	void

WriteComment() public method

public WriteComment ( string comment ) : void
comment	string
return	void

WriteModification() public method

public WriteModification ( IMass modification, ModificationSites sites, bool fixedModification = true ) : void
modification	IMass
sites	ModificationSites
fixedModification	bool
return	void

WritePSM() public method

public WritePSM ( PeptideSpectralMatch psm, int hitRank = 1 ) : void
psm	PeptideSpectralMatch
hitRank	int
return	void

WriteParameter() public method

public WriteParameter ( string name, string value ) : void
name	string
value	string
return	void

WriteProteinDatabase() public method

public WriteProteinDatabase ( string fastaFilePath, string name = "", string releaseDate = "" ) : void
fastaFilePath	string
name	string
releaseDate	string
return	void

WriteSampleProtease() public method

public WriteSampleProtease ( Protease protease ) : void
protease	CSMSL.Proteomics.Protease
return	void

WriteSearchProtease() public method

public WriteSearchProtease ( Protease protease, int maxMissedClevages, bool semiDigested = false ) : void
protease	CSMSL.Proteomics.Protease
maxMissedClevages	int
semiDigested	bool
return	void