C# Class Coon.Compass.Lotor.Lotor

Afficher le fichier Open project: dbaileychess/Compass Class Usage Examples

Méthodes publiques

Свойство	Type	Description
FixedModifications	List
QuantifiedModifications	List

Méthodes publiques

Méthode	Description
GetPValue ( PSM psm, Tolerance prod_tolerance, double cutoff ) : double
Localize ( ) : void
LocalizedIsoform ( double data ) : Tuple
Log ( string message, bool isError = false ) : void
Lotor ( string rawFileDirectory, string inputcsvFile, string outputDirectory, List fixedModifications, List quantifiedModifications, Tolerance prod_Tolerance, int scoreCutoff, bool separateGroups, double productThreshold, bool ignoreCTerminal, bool reduceSites, FragmentTypes fragType, bool phosphoNeutralLoss = false ) : System
ProgressUpdate ( double percent ) : void

Méthodes protégées

Méthode	Description
OnFinished ( ) : void

Private Methods

Méthode	Description
CalculateBestIsoforms ( List psms, FragmentTypes fragType, Tolerance prod_tolerance, double productThreshold, bool phosphoNeutralLosses ) : List
CompileResults ( List hits, string csvFile, string outputDirectory, bool breakProteinsApart = false ) : List
LoadAllPSMs ( string csvFile, string rawFileDirectory, List fixedMods ) : List
LocalizedIsoformSimple ( PSM psm ) : Tuple
WriteResults ( List proteins, string csvFile, string outDirectory, int firstQuant, int lastQuant ) : void

Method Details

GetPValue() public static méthode

public static GetPValue ( PSM psm, Tolerance prod_tolerance, double cutoff ) : double
psm	PSM
prod_tolerance	CSMSL.Tolerance
cutoff	double
Résultat	double

Localize() public méthode

public Localize ( ) : void
Résultat	void

LocalizedIsoform() public static méthode

public static LocalizedIsoform ( double data ) : Tuple
data	double
Résultat	Tuple

Log() public méthode

public Log ( string message, bool isError = false ) : void
message	string
isError	bool
Résultat	void

Lotor() public méthode

public Lotor ( string rawFileDirectory, string inputcsvFile, string outputDirectory, List fixedModifications, List quantifiedModifications, Tolerance prod_Tolerance, int scoreCutoff, bool separateGroups, double productThreshold, bool ignoreCTerminal, bool reduceSites, FragmentTypes fragType, bool phosphoNeutralLoss = false ) : System
rawFileDirectory	string
inputcsvFile	string
outputDirectory	string
fixedModifications	List
quantifiedModifications	List
prod_Tolerance	CSMSL.Tolerance
scoreCutoff	int
separateGroups	bool
productThreshold	double
ignoreCTerminal	bool
reduceSites	bool
fragType	FragmentTypes
phosphoNeutralLoss	bool
Résultat	System

OnFinished() protected méthode

protected OnFinished ( ) : void
Résultat	void

ProgressUpdate() public méthode

public ProgressUpdate ( double percent ) : void
percent	double
Résultat	void

Property Details

FixedModifications public_oe static_oe property

public static List FixedModifications
Résultat	List

QuantifiedModifications public_oe static_oe property

public static List QuantifiedModifications
Résultat	List