C# Class Coon.Compass.DtaGenerator.DtaGenerator

Afficher le fichier Open project: dbaileychess/Compass Class Usage Examples

Méthodes publiques

Свойство Type Description
CleanPrecursorHighMz double
CleanPrecursorLowMz double
EtdHighDa double
EtdLowDa double
IncludeLog bool
NeutralLossesIncluded bool
RangesToRemove List

Méthodes publiques

Méthode Description
CleanETD ( List rangesToRemove, double precursorMass, int precursorZ, double lowWindow, double highWindow ) : void
CleanPrecursor ( List rangesToRemove, double precursorMZ, double lowWindow = LOW_PRECURSOR_CLEANING_WINDOW_MZ, double highWidnow = HIGH_PRECURSOR_CLEANING_WINDOW_MZ ) : void
DtaGenerator ( IList rawFilepaths, int minimumAssumedPrecursorChargeState, int maximumAssumedPrecursorChargeState, bool cleanPrecursor, bool enableEtdPreProcessing, bool cleanTmtDuplex, bool cleanItraq4Plex, bool cleanTmt6Plex, bool cleanItraq8Plex, bool groupByActivationEnergyTime, bool sequestDtaOutput, bool omssaTxtOutput, bool mascotMgfOutput, string outputFolder, List neutralLosses, List rangesToRemove, bool includeLog = true, double clnPrecursorLowMz = LOW_PRECURSOR_CLEANING_WINDOW_MZ, double clnPrecursorHighMz = HIGH_PRECURSOR_CLEANING_WINDOW_MZ, double etdLowDa = LOW_NEUTRAL_LOSS_CLEANING_WINDOW_DA, double etdHighDa = HIGH_PRECURSOR_CLEANING_WINDOW_MZ ) : System
GenerateDtas ( ) : void

Méthodes protégées

Méthode Description
onFinished ( EventArgs e ) : void
onFinishedFile ( FilepathEventArgs e ) : void
onStartingFile ( FilepathEventArgs e ) : void
onThrowException ( ExceptionEventArgs e ) : void
onUpdateProgress ( ) : void

Private Methods

Méthode Description
AllIndicesOf ( string s, char c ) : IEnumerable
ProcessFile ( string msDataFile, bool includeLog = false, bool groupByFragmentation = true ) : void

Method Details

CleanETD() public static méthode

public static CleanETD ( List rangesToRemove, double precursorMass, int precursorZ, double lowWindow, double highWindow ) : void
rangesToRemove List
precursorMass double
precursorZ int
lowWindow double
highWindow double
Résultat void

CleanPrecursor() public static méthode

public static CleanPrecursor ( List rangesToRemove, double precursorMZ, double lowWindow = LOW_PRECURSOR_CLEANING_WINDOW_MZ, double highWidnow = HIGH_PRECURSOR_CLEANING_WINDOW_MZ ) : void
rangesToRemove List
precursorMZ double
lowWindow double
highWidnow double
Résultat void

DtaGenerator() public méthode

public DtaGenerator ( IList rawFilepaths, int minimumAssumedPrecursorChargeState, int maximumAssumedPrecursorChargeState, bool cleanPrecursor, bool enableEtdPreProcessing, bool cleanTmtDuplex, bool cleanItraq4Plex, bool cleanTmt6Plex, bool cleanItraq8Plex, bool groupByActivationEnergyTime, bool sequestDtaOutput, bool omssaTxtOutput, bool mascotMgfOutput, string outputFolder, List neutralLosses, List rangesToRemove, bool includeLog = true, double clnPrecursorLowMz = LOW_PRECURSOR_CLEANING_WINDOW_MZ, double clnPrecursorHighMz = HIGH_PRECURSOR_CLEANING_WINDOW_MZ, double etdLowDa = LOW_NEUTRAL_LOSS_CLEANING_WINDOW_DA, double etdHighDa = HIGH_PRECURSOR_CLEANING_WINDOW_MZ ) : System
rawFilepaths IList
minimumAssumedPrecursorChargeState int
maximumAssumedPrecursorChargeState int
cleanPrecursor bool
enableEtdPreProcessing bool
cleanTmtDuplex bool
cleanItraq4Plex bool
cleanTmt6Plex bool
cleanItraq8Plex bool
groupByActivationEnergyTime bool
sequestDtaOutput bool
omssaTxtOutput bool
mascotMgfOutput bool
outputFolder string
neutralLosses List
rangesToRemove List
includeLog bool
clnPrecursorLowMz double
clnPrecursorHighMz double
etdLowDa double
etdHighDa double
Résultat System

GenerateDtas() public méthode

public GenerateDtas ( ) : void
Résultat void

onFinished() protected méthode

protected onFinished ( EventArgs e ) : void
e System.EventArgs
Résultat void

onFinishedFile() protected méthode

protected onFinishedFile ( FilepathEventArgs e ) : void
e FilepathEventArgs
Résultat void

onStartingFile() protected méthode

protected onStartingFile ( FilepathEventArgs e ) : void
e FilepathEventArgs
Résultat void

onThrowException() protected méthode

protected onThrowException ( ExceptionEventArgs e ) : void
e ExceptionEventArgs
Résultat void

onUpdateProgress() protected méthode

protected onUpdateProgress ( ) : void
Résultat void

Property Details

CleanPrecursorHighMz public_oe property

public double CleanPrecursorHighMz
Résultat double

CleanPrecursorLowMz public_oe property

public double CleanPrecursorLowMz
Résultat double

EtdHighDa public_oe property

public double EtdHighDa
Résultat double

EtdLowDa public_oe property

public double EtdLowDa
Résultat double

IncludeLog public_oe static_oe property

public static bool IncludeLog
Résultat bool

NeutralLossesIncluded public_oe static_oe property

public static bool NeutralLossesIncluded
Résultat bool

RangesToRemove public_oe property

public List RangesToRemove
Résultat List