C# Class libsbmlcs.Model

Inheritance: SBase

Datei anzeigen Open project: sys-bio/libroadrunner-deps Class Usage Examples

Public Methods

Method	Description
Dispose ( ) : void
Model ( Model orig ) : System
Model ( SBMLNamespaces sbmlns ) : System
Model ( long level, long version ) : System
addCompartment ( Compartment c ) : int
addCompartmentType ( CompartmentType ct ) : int
addConstantAttribute ( ) : void
addConstraint ( Constraint c ) : int
addDefinitionsForDefaultUnits ( ) : void
addEvent ( Event e ) : int
addFunctionDefinition ( FunctionDefinition fd ) : int
addInitialAssignment ( InitialAssignment ia ) : int
addModifiers ( ) : void
addParameter ( Parameter p ) : int
addReaction ( Reaction r ) : int
addRule ( Rule r ) : int
addSpecies ( Species s ) : int
addSpeciesType ( SpeciesType st ) : int
addUnitDefinition ( UnitDefinition ud ) : int
appendAnnotation ( XMLNode annotation ) : int
appendAnnotation ( string annotation ) : int
appendFrom ( Model model ) : int
assignRequiredValues ( ) : void
clone ( ) : Model
connectToChild ( ) : void
convertL1ToL2 ( ) : void
convertL1ToL3 ( ) : void
convertL1ToL3 ( bool addDefaultUnits ) : void
convertL2ToL1 ( ) : void
convertL2ToL1 ( bool strict ) : void
convertL2ToL3 ( ) : void
convertL2ToL3 ( bool strict ) : void
convertL2ToL3 ( bool strict, bool addDefaultUnits ) : void
convertL3ToL1 ( ) : void
convertL3ToL1 ( bool strict ) : void
convertL3ToL2 ( ) : void
convertL3ToL2 ( bool strict ) : void
convertParametersToLocals ( long level, long version ) : void
convertStoichiometryMath ( ) : void
createAlgebraicRule ( ) : AlgebraicRule
createAssignmentRule ( ) : AssignmentRule
createCompartment ( ) : Compartment
createCompartmentType ( ) : CompartmentType
createConstraint ( ) : Constraint
createDelay ( ) : Delay
createEvent ( ) : Event
createEventAssignment ( ) : EventAssignment
createFunctionDefinition ( ) : FunctionDefinition
createInitialAssignment ( ) : InitialAssignment
createKineticLaw ( ) : KineticLaw
createKineticLawLocalParameter ( ) : LocalParameter
createKineticLawParameter ( ) : Parameter
createModifier ( ) : ModifierSpeciesReference
createParameter ( ) : Parameter
createProduct ( ) : SpeciesReference
createRateRule ( ) : RateRule
createReactant ( ) : SpeciesReference
createReaction ( ) : Reaction
createSpecies ( ) : Species
createSpeciesType ( ) : SpeciesType
createTrigger ( ) : Trigger
createUnit ( ) : Unit
createUnitDefinition ( ) : UnitDefinition
dealWithDefaultValues ( ) : void
dealWithEvents ( bool strict ) : void
dealWithModelUnits ( ) : void
dealWithModelUnits ( bool strict ) : void
dealWithStoichiometry ( ) : void
enablePackageInternal ( string pkgURI, string pkgPrefix, bool flag ) : void
getAreaUnits ( ) : string
getAssignmentRule ( string variable ) : AssignmentRule
getAssignmentRuleByVariable ( string variable ) : AssignmentRule
getCompartment ( long n ) : Compartment
getCompartment ( string sid ) : Compartment
getCompartmentType ( long n ) : CompartmentType
getCompartmentType ( string sid ) : CompartmentType
getConstraint ( long n ) : Constraint
getConversionFactor ( ) : string
getElementByMetaId ( string metaid ) : SBase
getElementBySId ( string id ) : SBase
getElementName ( ) : string
getEvent ( long n ) : Event
getEvent ( string sid ) : Event
getExtentUnits ( ) : string
getFormulaUnitsDataForAssignment ( string sid ) : SWIGTYPE_p_FormulaUnitsData
getFormulaUnitsDataForVariable ( string sid ) : SWIGTYPE_p_FormulaUnitsData
getFunctionDefinition ( long n ) : FunctionDefinition
getFunctionDefinition ( string sid ) : FunctionDefinition
getId ( ) : string
getInitialAssignment ( long n ) : InitialAssignment
getInitialAssignment ( string symbol ) : InitialAssignment
getInitialAssignmentBySymbol ( string symbol ) : InitialAssignment
getLengthUnits ( ) : string
getListOfCompartmentTypes ( ) : ListOfCompartmentTypes
getListOfCompartments ( ) : ListOfCompartments
getListOfConstraints ( ) : ListOfConstraints
getListOfEvents ( ) : ListOfEvents
getListOfFunctionDefinitions ( ) : ListOfFunctionDefinitions
getListOfInitialAssignments ( ) : ListOfInitialAssignments
getListOfParameters ( ) : ListOfParameters
getListOfReactions ( ) : ListOfReactions
getListOfRules ( ) : ListOfRules
getListOfSpecies ( ) : ListOfSpecies
getListOfSpeciesTypes ( ) : ListOfSpeciesTypes
getListOfUnitDefinitions ( ) : ListOfUnitDefinitions
getModifierSpeciesReference ( string sid ) : ModifierSpeciesReference
getName ( ) : string
getNumCompartmentTypes ( ) : long
getNumCompartments ( ) : long
getNumConstraints ( ) : long
getNumEvents ( ) : long
getNumFunctionDefinitions ( ) : long
getNumInitialAssignments ( ) : long
getNumParameters ( ) : long
getNumReactions ( ) : long
getNumRules ( ) : long
getNumSpecies ( ) : long
getNumSpeciesTypes ( ) : long
getNumSpeciesWithBoundaryCondition ( ) : long
getNumUnitDefinitions ( ) : long
getParameter ( long n ) : Parameter
getParameter ( string sid ) : Parameter
getRateRule ( string variable ) : RateRule
getRateRuleByVariable ( string variable ) : RateRule
getReaction ( long n ) : Reaction
getReaction ( string sid ) : Reaction
getRule ( long n ) : Rule
getRule ( string variable ) : Rule
getRuleByVariable ( string variable ) : Rule
getSpecies ( long n ) : Species
getSpecies ( string sid ) : Species
getSpeciesReference ( string sid ) : SpeciesReference
getSpeciesType ( long n ) : SpeciesType
getSpeciesType ( string sid ) : SpeciesType
getSubstanceUnits ( ) : string
getTimeUnits ( ) : string
getTypeCode ( ) : int
getUnitDefinition ( long n ) : UnitDefinition
getUnitDefinition ( string sid ) : UnitDefinition
getVolumeUnits ( ) : string
hasRequiredElements ( ) : bool
isPopulatedListFormulaUnitsData ( ) : bool
isSetAreaUnits ( ) : bool
isSetConversionFactor ( ) : bool
isSetExtentUnits ( ) : bool
isSetId ( ) : bool
isSetLengthUnits ( ) : bool
isSetName ( ) : bool
isSetSubstanceUnits ( ) : bool
isSetTimeUnits ( ) : bool
isSetVolumeUnits ( ) : bool
populateListFormulaUnitsData ( ) : void
removeCompartment ( long n ) : Compartment
removeCompartment ( string sid ) : Compartment
removeCompartmentType ( long n ) : CompartmentType
removeCompartmentType ( string sid ) : CompartmentType
removeCompartmentTypes ( ) : void
removeConstraint ( long n ) : Constraint
removeEvent ( long n ) : Event
removeEvent ( string sid ) : Event
removeFromParentAndDelete ( ) : int
removeFunctionDefinition ( long n ) : FunctionDefinition
removeFunctionDefinition ( string sid ) : FunctionDefinition
removeInitialAssignment ( long n ) : InitialAssignment
removeInitialAssignment ( string symbol ) : InitialAssignment
removeParameter ( long n ) : Parameter
removeParameter ( string sid ) : Parameter
removeParameterRuleUnits ( bool strict ) : void
removeReaction ( long n ) : Reaction
removeReaction ( string sid ) : Reaction
removeRule ( long n ) : Rule
removeRule ( string variable ) : Rule
removeRuleByVariable ( string variable ) : Rule
removeSpecies ( long n ) : Species
removeSpecies ( string sid ) : Species
removeSpeciesType ( long n ) : SpeciesType
removeSpeciesType ( string sid ) : SpeciesType
removeSpeciesTypes ( ) : void
removeUnitDefinition ( long n ) : UnitDefinition
removeUnitDefinition ( string sid ) : UnitDefinition
renameAllIds ( IdentifierTransformer idTransformer ) : int
renameAllIds ( IdentifierTransformer idTransformer, ElementFilter filter ) : int
renameIDs ( SBaseList elements, IdentifierTransformer idTransformer ) : void
renameSIdRefs ( string oldid, string newid ) : void
renameUnitSIdRefs ( string oldid, string newid ) : void
setAnnotation ( XMLNode annotation ) : int
setAnnotation ( string annotation ) : int
setAreaUnits ( string units ) : int
setConversionFactor ( string units ) : int
setExtentUnits ( string units ) : int
setId ( string sid ) : int
setLengthUnits ( string units ) : int
setName ( string name ) : int
setSpatialDimensions ( ) : void
setSpatialDimensions ( double dims ) : void
setSpeciesReferenceConstantValueAndStoichiometry ( ) : void
setSubstanceUnits ( string units ) : int
setTimeUnits ( string units ) : int
setVolumeUnits ( string units ) : int
unsetAreaUnits ( ) : int
unsetConversionFactor ( ) : int
unsetExtentUnits ( ) : int
unsetId ( ) : int
unsetLengthUnits ( ) : int
unsetName ( ) : int
unsetSubstanceUnits ( ) : int
unsetTimeUnits ( ) : int
unsetVolumeUnits ( ) : int

Private Methods

Method	Description
Model ( IntPtr cPtr, bool cMemoryOwn ) : System
getCPtr ( Model obj ) : HandleRef
getCPtrAndDisown ( Model obj ) : HandleRef

Method Details

Dispose() public method

public Dispose ( ) : void
return	void

Model() public method

public Model ( Model orig ) : System
orig	Model
return	System

Model() public method

public Model ( SBMLNamespaces sbmlns ) : System
sbmlns	SBMLNamespaces
return	System

Model() public method

public Model ( long level, long version ) : System
level	long
version	long
return	System

addCompartment() public method

public addCompartment ( Compartment c ) : int
c	Compartment
return	int

addCompartmentType() public method

public addCompartmentType ( CompartmentType ct ) : int
ct	CompartmentType
return	int

addConstantAttribute() public method

public addConstantAttribute ( ) : void
return	void

addConstraint() public method

public addConstraint ( Constraint c ) : int
c	Constraint
return	int

addDefinitionsForDefaultUnits() public method

public addDefinitionsForDefaultUnits ( ) : void
return	void

addEvent() public method

public addEvent ( Event e ) : int
e	Event
return	int

addFunctionDefinition() public method

public addFunctionDefinition ( FunctionDefinition fd ) : int
fd	FunctionDefinition
return	int

addInitialAssignment() public method

public addInitialAssignment ( InitialAssignment ia ) : int
ia	InitialAssignment
return	int

addModifiers() public method

public addModifiers ( ) : void
return	void

addParameter() public method

public addParameter ( Parameter p ) : int
p	Parameter
return	int

addReaction() public method

public addReaction ( Reaction r ) : int
r	Reaction
return	int

addRule() public method

public addRule ( Rule r ) : int
r	Rule
return	int

addSpecies() public method

public addSpecies ( Species s ) : int
s	Species
return	int

addSpeciesType() public method

public addSpeciesType ( SpeciesType st ) : int
st	SpeciesType
return	int

addUnitDefinition() public method

public addUnitDefinition ( UnitDefinition ud ) : int
ud	UnitDefinition
return	int

appendAnnotation() public method

public appendAnnotation ( XMLNode annotation ) : int
annotation	XMLNode
return	int

appendAnnotation() public method

public appendAnnotation ( string annotation ) : int
annotation	string
return	int

appendFrom() public method

public appendFrom ( Model model ) : int
model	Model
return	int

assignRequiredValues() public method

public assignRequiredValues ( ) : void
return	void

clone() public method

public clone ( ) : Model
return	Model

connectToChild() public method

public connectToChild ( ) : void
return	void

convertL1ToL2() public method

public convertL1ToL2 ( ) : void
return	void

convertL1ToL3() public method

public convertL1ToL3 ( ) : void
return	void

convertL1ToL3() public method

public convertL1ToL3 ( bool addDefaultUnits ) : void
addDefaultUnits	bool
return	void

convertL2ToL1() public method

public convertL2ToL1 ( ) : void
return	void

convertL2ToL1() public method

public convertL2ToL1 ( bool strict ) : void
strict	bool
return	void

convertL2ToL3() public method

public convertL2ToL3 ( ) : void
return	void

convertL2ToL3() public method

public convertL2ToL3 ( bool strict ) : void
strict	bool
return	void

convertL2ToL3() public method

public convertL2ToL3 ( bool strict, bool addDefaultUnits ) : void
strict	bool
addDefaultUnits	bool
return	void

convertL3ToL1() public method

public convertL3ToL1 ( ) : void
return	void

convertL3ToL1() public method

public convertL3ToL1 ( bool strict ) : void
strict	bool
return	void

convertL3ToL2() public method

public convertL3ToL2 ( ) : void
return	void

convertL3ToL2() public method

public convertL3ToL2 ( bool strict ) : void
strict	bool
return	void

convertParametersToLocals() public method

public convertParametersToLocals ( long level, long version ) : void
level	long
version	long
return	void

convertStoichiometryMath() public method

public convertStoichiometryMath ( ) : void
return	void

createAlgebraicRule() public method

public createAlgebraicRule ( ) : AlgebraicRule
return	AlgebraicRule

createAssignmentRule() public method

public createAssignmentRule ( ) : AssignmentRule
return	AssignmentRule

createCompartment() public method

public createCompartment ( ) : Compartment
return	Compartment

createCompartmentType() public method

public createCompartmentType ( ) : CompartmentType
return	CompartmentType

createConstraint() public method

public createConstraint ( ) : Constraint
return	Constraint

createDelay() public method

public createDelay ( ) : Delay
return	Delay

createEvent() public method

public createEvent ( ) : Event
return	Event

createEventAssignment() public method

public createEventAssignment ( ) : EventAssignment
return	EventAssignment

createFunctionDefinition() public method

public createFunctionDefinition ( ) : FunctionDefinition
return	FunctionDefinition

createInitialAssignment() public method

public createInitialAssignment ( ) : InitialAssignment
return	InitialAssignment

createKineticLaw() public method

public createKineticLaw ( ) : KineticLaw
return	KineticLaw

createKineticLawLocalParameter() public method

public createKineticLawLocalParameter ( ) : LocalParameter
return	LocalParameter

createKineticLawParameter() public method

public createKineticLawParameter ( ) : Parameter
return	Parameter

createModifier() public method

public createModifier ( ) : ModifierSpeciesReference
return	ModifierSpeciesReference

createParameter() public method

public createParameter ( ) : Parameter
return	Parameter

createProduct() public method

public createProduct ( ) : SpeciesReference
return	SpeciesReference

createRateRule() public method

public createRateRule ( ) : RateRule
return	RateRule

createReactant() public method

public createReactant ( ) : SpeciesReference
return	SpeciesReference

createReaction() public method

public createReaction ( ) : Reaction
return	Reaction

createSpecies() public method

public createSpecies ( ) : Species
return	Species

createSpeciesType() public method

public createSpeciesType ( ) : SpeciesType
return	SpeciesType

createTrigger() public method

public createTrigger ( ) : Trigger
return	Trigger

createUnit() public method

public createUnit ( ) : Unit
return	Unit

createUnitDefinition() public method

public createUnitDefinition ( ) : UnitDefinition
return	UnitDefinition

dealWithDefaultValues() public method

public dealWithDefaultValues ( ) : void
return	void

dealWithEvents() public method

public dealWithEvents ( bool strict ) : void
strict	bool
return	void

dealWithModelUnits() public method

public dealWithModelUnits ( ) : void
return	void

dealWithModelUnits() public method

public dealWithModelUnits ( bool strict ) : void
strict	bool
return	void

dealWithStoichiometry() public method

public dealWithStoichiometry ( ) : void
return	void

enablePackageInternal() public method

public enablePackageInternal ( string pkgURI, string pkgPrefix, bool flag ) : void
pkgURI	string
pkgPrefix	string
flag	bool
return	void

getAreaUnits() public method

public getAreaUnits ( ) : string
return	string

getAssignmentRule() public method

public getAssignmentRule ( string variable ) : AssignmentRule
variable	string
return	AssignmentRule

getAssignmentRuleByVariable() public method

public getAssignmentRuleByVariable ( string variable ) : AssignmentRule
variable	string
return	AssignmentRule

getCompartment() public method

public getCompartment ( long n ) : Compartment
n	long
return	Compartment

getCompartment() public method

public getCompartment ( string sid ) : Compartment
sid	string
return	Compartment

getCompartmentType() public method

public getCompartmentType ( long n ) : CompartmentType
n	long
return	CompartmentType

getCompartmentType() public method

public getCompartmentType ( string sid ) : CompartmentType
sid	string
return	CompartmentType

getConstraint() public method

public getConstraint ( long n ) : Constraint
n	long
return	Constraint

getConversionFactor() public method

public getConversionFactor ( ) : string
return	string

getElementByMetaId() public method

public getElementByMetaId ( string metaid ) : SBase
metaid	string
return	SBase

getElementBySId() public method

public getElementBySId ( string id ) : SBase
id	string
return	SBase

getElementName() public method

public getElementName ( ) : string
return	string

getEvent() public method

public getEvent ( long n ) : Event
n	long
return	Event

getEvent() public method

public getEvent ( string sid ) : Event
sid	string
return	Event

getExtentUnits() public method

public getExtentUnits ( ) : string
return	string

getFormulaUnitsDataForAssignment() public method

public getFormulaUnitsDataForAssignment ( string sid ) : SWIGTYPE_p_FormulaUnitsData
sid	string
return	SWIGTYPE_p_FormulaUnitsData

getFormulaUnitsDataForVariable() public method

public getFormulaUnitsDataForVariable ( string sid ) : SWIGTYPE_p_FormulaUnitsData
sid	string
return	SWIGTYPE_p_FormulaUnitsData

getFunctionDefinition() public method

public getFunctionDefinition ( long n ) : FunctionDefinition
n	long
return	FunctionDefinition

getFunctionDefinition() public method

public getFunctionDefinition ( string sid ) : FunctionDefinition
sid	string
return	FunctionDefinition

getId() public method

public getId ( ) : string
return	string

getInitialAssignment() public method

public getInitialAssignment ( long n ) : InitialAssignment
n	long
return	InitialAssignment

getInitialAssignment() public method

public getInitialAssignment ( string symbol ) : InitialAssignment
symbol	string
return	InitialAssignment

getInitialAssignmentBySymbol() public method

public getInitialAssignmentBySymbol ( string symbol ) : InitialAssignment
symbol	string
return	InitialAssignment

getLengthUnits() public method

public getLengthUnits ( ) : string
return	string

getListOfCompartmentTypes() public method

public getListOfCompartmentTypes ( ) : ListOfCompartmentTypes
return	ListOfCompartmentTypes

getListOfCompartments() public method

public getListOfCompartments ( ) : ListOfCompartments
return	ListOfCompartments

getListOfConstraints() public method

public getListOfConstraints ( ) : ListOfConstraints
return	ListOfConstraints

getListOfEvents() public method

public getListOfEvents ( ) : ListOfEvents
return	ListOfEvents

getListOfFunctionDefinitions() public method

public getListOfFunctionDefinitions ( ) : ListOfFunctionDefinitions
return	ListOfFunctionDefinitions

getListOfInitialAssignments() public method

public getListOfInitialAssignments ( ) : ListOfInitialAssignments
return	ListOfInitialAssignments

getListOfParameters() public method

public getListOfParameters ( ) : ListOfParameters
return	ListOfParameters

getListOfReactions() public method

public getListOfReactions ( ) : ListOfReactions
return	ListOfReactions

getListOfRules() public method

public getListOfRules ( ) : ListOfRules
return	ListOfRules

getListOfSpecies() public method

public getListOfSpecies ( ) : ListOfSpecies
return	ListOfSpecies

getListOfSpeciesTypes() public method

public getListOfSpeciesTypes ( ) : ListOfSpeciesTypes
return	ListOfSpeciesTypes

getListOfUnitDefinitions() public method

public getListOfUnitDefinitions ( ) : ListOfUnitDefinitions
return	ListOfUnitDefinitions

getModifierSpeciesReference() public method

public getModifierSpeciesReference ( string sid ) : ModifierSpeciesReference
sid	string
return	ModifierSpeciesReference

getName() public method

public getName ( ) : string
return	string

getNumCompartmentTypes() public method

public getNumCompartmentTypes ( ) : long
return	long

getNumCompartments() public method

public getNumCompartments ( ) : long
return	long

getNumConstraints() public method

public getNumConstraints ( ) : long
return	long

getNumEvents() public method

public getNumEvents ( ) : long
return	long

getNumFunctionDefinitions() public method

public getNumFunctionDefinitions ( ) : long
return	long

getNumInitialAssignments() public method

public getNumInitialAssignments ( ) : long
return	long

getNumParameters() public method

public getNumParameters ( ) : long
return	long

getNumReactions() public method

public getNumReactions ( ) : long
return	long

getNumRules() public method

public getNumRules ( ) : long
return	long

getNumSpecies() public method

public getNumSpecies ( ) : long
return	long

getNumSpeciesTypes() public method

public getNumSpeciesTypes ( ) : long
return	long

getNumSpeciesWithBoundaryCondition() public method

public getNumSpeciesWithBoundaryCondition ( ) : long
return	long

getNumUnitDefinitions() public method

public getNumUnitDefinitions ( ) : long
return	long

getParameter() public method

public getParameter ( long n ) : Parameter
n	long
return	Parameter

getParameter() public method

public getParameter ( string sid ) : Parameter
sid	string
return	Parameter

getRateRule() public method

public getRateRule ( string variable ) : RateRule
variable	string
return	RateRule

getRateRuleByVariable() public method

public getRateRuleByVariable ( string variable ) : RateRule
variable	string
return	RateRule

getReaction() public method

public getReaction ( long n ) : Reaction
n	long
return	Reaction

getReaction() public method

public getReaction ( string sid ) : Reaction
sid	string
return	Reaction

getRule() public method

public getRule ( long n ) : Rule
n	long
return	Rule

getRule() public method

public getRule ( string variable ) : Rule
variable	string
return	Rule

getRuleByVariable() public method

public getRuleByVariable ( string variable ) : Rule
variable	string
return	Rule

getSpecies() public method

public getSpecies ( long n ) : Species
n	long
return	Species

getSpecies() public method

public getSpecies ( string sid ) : Species
sid	string
return	Species

getSpeciesReference() public method

public getSpeciesReference ( string sid ) : SpeciesReference
sid	string
return	SpeciesReference

getSpeciesType() public method

public getSpeciesType ( long n ) : SpeciesType
n	long
return	SpeciesType

getSpeciesType() public method

public getSpeciesType ( string sid ) : SpeciesType
sid	string
return	SpeciesType

getSubstanceUnits() public method

public getSubstanceUnits ( ) : string
return	string

getTimeUnits() public method

public getTimeUnits ( ) : string
return	string

getTypeCode() public method

public getTypeCode ( ) : int
return	int

getUnitDefinition() public method

public getUnitDefinition ( long n ) : UnitDefinition
n	long
return	UnitDefinition

getUnitDefinition() public method

public getUnitDefinition ( string sid ) : UnitDefinition
sid	string
return	UnitDefinition

getVolumeUnits() public method

public getVolumeUnits ( ) : string
return	string

hasRequiredElements() public method

public hasRequiredElements ( ) : bool
return	bool

isPopulatedListFormulaUnitsData() public method

public isPopulatedListFormulaUnitsData ( ) : bool
return	bool

isSetAreaUnits() public method

public isSetAreaUnits ( ) : bool
return	bool

isSetConversionFactor() public method

public isSetConversionFactor ( ) : bool
return	bool

isSetExtentUnits() public method

public isSetExtentUnits ( ) : bool
return	bool

isSetId() public method

public isSetId ( ) : bool
return	bool

isSetLengthUnits() public method

public isSetLengthUnits ( ) : bool
return	bool

isSetName() public method

public isSetName ( ) : bool
return	bool

isSetSubstanceUnits() public method

public isSetSubstanceUnits ( ) : bool
return	bool

isSetTimeUnits() public method

public isSetTimeUnits ( ) : bool
return	bool

isSetVolumeUnits() public method

public isSetVolumeUnits ( ) : bool
return	bool

populateListFormulaUnitsData() public method

public populateListFormulaUnitsData ( ) : void
return	void

removeCompartment() public method

public removeCompartment ( long n ) : Compartment
n	long
return	Compartment

removeCompartment() public method

public removeCompartment ( string sid ) : Compartment
sid	string
return	Compartment

removeCompartmentType() public method

public removeCompartmentType ( long n ) : CompartmentType
n	long
return	CompartmentType

removeCompartmentType() public method

public removeCompartmentType ( string sid ) : CompartmentType
sid	string
return	CompartmentType

removeCompartmentTypes() public method

public removeCompartmentTypes ( ) : void
return	void

removeConstraint() public method

public removeConstraint ( long n ) : Constraint
n	long
return	Constraint

removeEvent() public method

public removeEvent ( long n ) : Event
n	long
return	Event

removeEvent() public method

public removeEvent ( string sid ) : Event
sid	string
return	Event

removeFromParentAndDelete() public method

public removeFromParentAndDelete ( ) : int
return	int

removeFunctionDefinition() public method

public removeFunctionDefinition ( long n ) : FunctionDefinition
n	long
return	FunctionDefinition

removeFunctionDefinition() public method

public removeFunctionDefinition ( string sid ) : FunctionDefinition
sid	string
return	FunctionDefinition

removeInitialAssignment() public method

public removeInitialAssignment ( long n ) : InitialAssignment
n	long
return	InitialAssignment

removeInitialAssignment() public method

public removeInitialAssignment ( string symbol ) : InitialAssignment
symbol	string
return	InitialAssignment

removeParameter() public method

public removeParameter ( long n ) : Parameter
n	long
return	Parameter

removeParameter() public method

public removeParameter ( string sid ) : Parameter
sid	string
return	Parameter

removeParameterRuleUnits() public method

public removeParameterRuleUnits ( bool strict ) : void
strict	bool
return	void

removeReaction() public method

public removeReaction ( long n ) : Reaction
n	long
return	Reaction

removeReaction() public method

public removeReaction ( string sid ) : Reaction
sid	string
return	Reaction

removeRule() public method

public removeRule ( long n ) : Rule
n	long
return	Rule

removeRule() public method

public removeRule ( string variable ) : Rule
variable	string
return	Rule

removeRuleByVariable() public method

public removeRuleByVariable ( string variable ) : Rule
variable	string
return	Rule

removeSpecies() public method

public removeSpecies ( long n ) : Species
n	long
return	Species

removeSpecies() public method

public removeSpecies ( string sid ) : Species
sid	string
return	Species

removeSpeciesType() public method

public removeSpeciesType ( long n ) : SpeciesType
n	long
return	SpeciesType

removeSpeciesType() public method

public removeSpeciesType ( string sid ) : SpeciesType
sid	string
return	SpeciesType

removeSpeciesTypes() public method

public removeSpeciesTypes ( ) : void
return	void

removeUnitDefinition() public method

public removeUnitDefinition ( long n ) : UnitDefinition
n	long
return	UnitDefinition

removeUnitDefinition() public method

public removeUnitDefinition ( string sid ) : UnitDefinition
sid	string
return	UnitDefinition

renameAllIds() public method

public renameAllIds ( IdentifierTransformer idTransformer ) : int
idTransformer	IdentifierTransformer
return	int

renameAllIds() public method

public renameAllIds ( IdentifierTransformer idTransformer, ElementFilter filter ) : int
idTransformer	IdentifierTransformer
filter	ElementFilter
return	int

renameIDs() public method

public renameIDs ( SBaseList elements, IdentifierTransformer idTransformer ) : void
elements	SBaseList
idTransformer	IdentifierTransformer
return	void

renameSIdRefs() public method

public renameSIdRefs ( string oldid, string newid ) : void
oldid	string
newid	string
return	void

renameUnitSIdRefs() public method

public renameUnitSIdRefs ( string oldid, string newid ) : void
oldid	string
newid	string
return	void

setAnnotation() public method

public setAnnotation ( XMLNode annotation ) : int
annotation	XMLNode
return	int

setAnnotation() public method

public setAnnotation ( string annotation ) : int
annotation	string
return	int

setAreaUnits() public method

public setAreaUnits ( string units ) : int
units	string
return	int

setConversionFactor() public method

public setConversionFactor ( string units ) : int
units	string
return	int

setExtentUnits() public method

public setExtentUnits ( string units ) : int
units	string
return	int

setId() public method

public setId ( string sid ) : int
sid	string
return	int

setLengthUnits() public method

public setLengthUnits ( string units ) : int
units	string
return	int

setName() public method

public setName ( string name ) : int
name	string
return	int

setSpatialDimensions() public method

public setSpatialDimensions ( ) : void
return	void

setSpatialDimensions() public method

public setSpatialDimensions ( double dims ) : void
dims	double
return	void

setSpeciesReferenceConstantValueAndStoichiometry() public method

public setSpeciesReferenceConstantValueAndStoichiometry ( ) : void
return	void

setSubstanceUnits() public method

public setSubstanceUnits ( string units ) : int
units	string
return	int

setTimeUnits() public method

public setTimeUnits ( string units ) : int
units	string
return	int

setVolumeUnits() public method

public setVolumeUnits ( string units ) : int
units	string
return	int

unsetAreaUnits() public method

public unsetAreaUnits ( ) : int
return	int

unsetConversionFactor() public method

public unsetConversionFactor ( ) : int
return	int

unsetExtentUnits() public method

public unsetExtentUnits ( ) : int
return	int

unsetId() public method

public unsetId ( ) : int
return	int

unsetLengthUnits() public method

public unsetLengthUnits ( ) : int
return	int

unsetName() public method

public unsetName ( ) : int
return	int

unsetSubstanceUnits() public method

public unsetSubstanceUnits ( ) : int
return	int

unsetTimeUnits() public method

public unsetTimeUnits ( ) : int
return	int

unsetVolumeUnits() public method

public unsetVolumeUnits ( ) : int
return	int