C# Class Morpheus.AminoAcidPolymer

Show file Open project: cwenger/Morpheus Class Usage Examples

Public Methods

Method	Description
CalculateProductMass ( ProductType productType, int productNumber ) : double
CalculateProductMasses ( IEnumerable productTypes ) : List
SetFixedModifications ( IEnumerable fixedModifications ) : void
SetProductMassType ( MassType productMassType ) : void
ToString ( ) : string
this ( int index ) : char

Protected Methods

Method	Description
AminoAcidPolymer ( string baseSequence ) : System
AminoAcidPolymer ( string baseSequence, Dictionary knownModifications ) : System
GetVariableModificationPatterns ( Dictionary possibleVariableModifications ) : Modification>>.IEnumerable

Private Methods

Method	Description
GetVariableModificationPattern ( int variableModificationArray, IEnumerable possibleVariableModifications ) : Modification>.Dictionary
GetVariableModificationPatterns ( List possibleVariableModifications, int unmodifiedResiduesDesired, int variableModificationPattern, int index ) : IEnumerable
InitializeProductArrays ( ) : void

Method Details

AminoAcidPolymer() protected method

protected AminoAcidPolymer ( string baseSequence ) : System
baseSequence	string
return	System

AminoAcidPolymer() protected method

protected AminoAcidPolymer ( string baseSequence, Dictionary knownModifications ) : System
baseSequence	string
knownModifications	Dictionary
return	System

CalculateProductMass() public method

public CalculateProductMass ( ProductType productType, int productNumber ) : double
productType	ProductType
productNumber	int
return	double

CalculateProductMasses() public method

public CalculateProductMasses ( IEnumerable productTypes ) : List
productTypes	IEnumerable
return	List

GetVariableModificationPatterns() protected method

protected GetVariableModificationPatterns ( Dictionary possibleVariableModifications ) : Modification>>.IEnumerable
possibleVariableModifications	Dictionary
return	Modification>>.IEnumerable

SetFixedModifications() public method

public SetFixedModifications ( IEnumerable fixedModifications ) : void
fixedModifications	IEnumerable
return	void

SetProductMassType() public static method

public static SetProductMassType ( MassType productMassType ) : void
productMassType	MassType
return	void

ToString() public method

public ToString ( ) : string
return	string

this() public method

public this ( int index ) : char
index	int
return	char