C# Class CSMSL.Proteomics.Protease

Inheritance: IProtease

Show file Open project: dbaileychess/CSMSL Class Usage Examples

Public Properties

Property	Type	Description
UserProteasePath	string

Public Methods

Method	Description
AddProtease ( string name, Terminus terminus, string cut, string noCut = "" ) : Protease
GetAllProteases ( ) : IEnumerable
GetDigestionSites ( IAminoAcidSequence aminoacidpolymer ) : IEnumerable
GetDigestionSites ( string sequence ) : IEnumerable
GetProtease ( string name ) : Protease
Load ( ) : void	Load the default modification file If the default modification is missing or corrupted, it will auto generate it
Load ( string filePath ) : void	Load a protease file
MissedCleavages ( IAminoAcidSequence aminoAcidSequence ) : int
MissedCleavages ( string sequence ) : int
Protease ( string name, Terminus terminus, string cut, string nocut = "", string cleavePattern = "" ) : System
RemoveProtease ( Protease protease ) : bool
RemoveProtease ( string name ) : bool
RestoreDefaults ( ) : void
Save ( ) : void
SaveTo ( string filePath ) : void
ToString ( ) : string
TryGetProtease ( string name, Protease &protease ) : bool
this ( string name ) : Protease

Private Methods

Method	Description
OnProteasesChanged ( ) : void
Protease ( ) : System

Method Details

AddProtease() public static method

public static AddProtease ( string name, Terminus terminus, string cut, string noCut = "" ) : Protease
name	string
terminus	Terminus
cut	string
noCut	string
return	Protease

GetAllProteases() public static method

public static GetAllProteases ( ) : IEnumerable
return	IEnumerable

GetDigestionSites() public method

public GetDigestionSites ( IAminoAcidSequence aminoacidpolymer ) : IEnumerable
aminoacidpolymer	IAminoAcidSequence
return	IEnumerable

GetDigestionSites() public method

public GetDigestionSites ( string sequence ) : IEnumerable
sequence	string
return	IEnumerable

GetProtease() public static method

public static GetProtease ( string name ) : Protease
name	string
return	Protease

Load() public static method

Load the default modification file If the default modification is missing or corrupted, it will auto generate it

public static Load ( ) : void
return	void

Load() public static method

Load a protease file

public static Load ( string filePath ) : void
filePath	string	The path to the protase file
return	void

MissedCleavages() public method

public MissedCleavages ( IAminoAcidSequence aminoAcidSequence ) : int
aminoAcidSequence	IAminoAcidSequence
return	int

MissedCleavages() public method

public MissedCleavages ( string sequence ) : int
sequence	string
return	int

Protease() public method

public Protease ( string name, Terminus terminus, string cut, string nocut = "", string cleavePattern = "" ) : System
name	string
terminus	Terminus
cut	string
nocut	string
cleavePattern	string
return	System

RemoveProtease() public static method

public static RemoveProtease ( Protease protease ) : bool
protease	Protease
return	bool

RemoveProtease() public static method

public static RemoveProtease ( string name ) : bool
name	string
return	bool

RestoreDefaults() public static method

public static RestoreDefaults ( ) : void
return	void

Save() public static method

public static Save ( ) : void
return	void

SaveTo() public static method

public static SaveTo ( string filePath ) : void
filePath	string
return	void

ToString() public method

public ToString ( ) : string
return	string

TryGetProtease() public static method

public static TryGetProtease ( string name, Protease &protease ) : bool
name	string
protease	Protease
return	bool

this() public method

public this ( string name ) : Protease
name	string
return	Protease

Property Details

UserProteasePath public static property

public static string UserProteasePath
return	string