C# Class MorphExtractorCL.DendriteIO

显示文件 Open project: Vaa3D/vaa3d_tools Class Usage Examples

Public Methods

Method	Description
CytEdges ( StreamWriter sw, Dendrite dend, DendriteNode node, DendriteNode parent, DendriteNode pnode ) : void
CytNodes ( StreamWriter sw, Dendrite dend, DendriteNode node, DendriteNode parent, int &count ) : void
Edge ( DendriteNode node, DendriteNode root, int deg, StringBuilder sb ) : void
LoadFromSWC ( IEnumerable fileContent ) : Dendrite
LoadFromSWC ( string filename ) : Dendrite	SWCファイルを読み込んでDendriteインスタンスを生成
PajekEdgesRD ( StreamWriter sw, DendriteNode node, DendriteNode parent, DendriteNode pnode ) : void
PajekVerticesRD ( StreamWriter sw, Dendrite dend, DendriteNode node, DendriteNode parent, int &count ) : void
SaveAsCytoscapeFreeFormat ( String fname, Dendrite dend ) : void
SaveAsPajekFormat ( String fname, Dendrite dend ) : void
SaveAsTLP ( String fname, Dendrite dend ) : void
SaveEdgeList ( string fname, Dendrite dend ) : void
SaveToSWC ( string filename, Dendrite dend ) : void	DendriteインスタンスをSWCファイルに出力
SaveToSWCRec ( DendriteNode node, DendriteNode parent, StreamWriter writer ) : void
TLPCoord ( StreamWriter sw, DendriteNode node, DendriteNode parent ) : void
TLPDistance ( StreamWriter sw, DendriteNode node, DendriteNode parent ) : void
TLPEdge ( StreamWriter sw, DendriteNode node, DendriteNode parent, DendriteNode pnode, int &count ) : void
TLPEdgeLength ( StreamWriter sw, DendriteNode node, DendriteNode parent, DendriteNode pnode, int &count ) : void
TLPElectricalDistance ( StreamWriter sw, DendriteNode node, DendriteNode parent ) : void
TLPNodeType ( StreamWriter sw, DendriteNode node, DendriteNode parent ) : void
TLPNodes ( StreamWriter sw, DendriteNode node, DendriteNode parent, int &count ) : void
TLPRadius ( StreamWriter sw, DendriteNode node, DendriteNode parent ) : void

Private Methods

Method	Description
ParseSWC ( IEnumerable fileContents ) : IEnumerable

Method Details

CytEdges() public method

public CytEdges ( StreamWriter sw, Dendrite dend, DendriteNode node, DendriteNode parent, DendriteNode pnode ) : void
sw	System.IO.StreamWriter
dend	Dendrite
node	DendriteNode
parent	DendriteNode
pnode	DendriteNode
return	void

CytNodes() public method

public CytNodes ( StreamWriter sw, Dendrite dend, DendriteNode node, DendriteNode parent, int &count ) : void
sw	System.IO.StreamWriter
dend	Dendrite
node	DendriteNode
parent	DendriteNode
count	int
return	void

Edge() public method

public Edge ( DendriteNode node, DendriteNode root, int deg, StringBuilder sb ) : void
node	DendriteNode
root	DendriteNode
deg	int
sb	StringBuilder
return	void

LoadFromSWC() public method

public LoadFromSWC ( IEnumerable fileContent ) : Dendrite
fileContent	IEnumerable
return	Dendrite

LoadFromSWC() public method

SWCファイルを読み込んでDendriteインスタンスを生成

public LoadFromSWC ( string filename ) : Dendrite
filename	string	入力ファイル名
return	Dendrite

PajekEdgesRD() public method

public PajekEdgesRD ( StreamWriter sw, DendriteNode node, DendriteNode parent, DendriteNode pnode ) : void
sw	System.IO.StreamWriter
node	DendriteNode
parent	DendriteNode
pnode	DendriteNode
return	void

PajekVerticesRD() public method

public PajekVerticesRD ( StreamWriter sw, Dendrite dend, DendriteNode node, DendriteNode parent, int &count ) : void
sw	System.IO.StreamWriter
dend	Dendrite
node	DendriteNode
parent	DendriteNode
count	int
return	void

SaveAsCytoscapeFreeFormat() public method

public SaveAsCytoscapeFreeFormat ( String fname, Dendrite dend ) : void
fname	String
dend	Dendrite
return	void

SaveAsPajekFormat() public method

public SaveAsPajekFormat ( String fname, Dendrite dend ) : void
fname	String
dend	Dendrite
return	void

SaveAsTLP() public method

public SaveAsTLP ( String fname, Dendrite dend ) : void
fname	String
dend	Dendrite
return	void

SaveEdgeList() public method

public SaveEdgeList ( string fname, Dendrite dend ) : void
fname	string
dend	Dendrite
return	void

SaveToSWC() public method

DendriteインスタンスをSWCファイルに出力

public SaveToSWC ( string filename, Dendrite dend ) : void
filename	string	出力ファイル名
dend	Dendrite
return	void

SaveToSWCRec() public method

public SaveToSWCRec ( DendriteNode node, DendriteNode parent, StreamWriter writer ) : void
node	DendriteNode
parent	DendriteNode
writer	System.IO.StreamWriter
return	void

TLPCoord() public method

public TLPCoord ( StreamWriter sw, DendriteNode node, DendriteNode parent ) : void
sw	System.IO.StreamWriter
node	DendriteNode
parent	DendriteNode
return	void

TLPDistance() public method

public TLPDistance ( StreamWriter sw, DendriteNode node, DendriteNode parent ) : void
sw	System.IO.StreamWriter
node	DendriteNode
parent	DendriteNode
return	void

TLPEdge() public method

public TLPEdge ( StreamWriter sw, DendriteNode node, DendriteNode parent, DendriteNode pnode, int &count ) : void
sw	System.IO.StreamWriter
node	DendriteNode
parent	DendriteNode
pnode	DendriteNode
count	int
return	void

TLPEdgeLength() public method

public TLPEdgeLength ( StreamWriter sw, DendriteNode node, DendriteNode parent, DendriteNode pnode, int &count ) : void
sw	System.IO.StreamWriter
node	DendriteNode
parent	DendriteNode
pnode	DendriteNode
count	int
return	void

TLPElectricalDistance() public method

public TLPElectricalDistance ( StreamWriter sw, DendriteNode node, DendriteNode parent ) : void
sw	System.IO.StreamWriter
node	DendriteNode
parent	DendriteNode
return	void

TLPNodeType() public method

public TLPNodeType ( StreamWriter sw, DendriteNode node, DendriteNode parent ) : void
sw	System.IO.StreamWriter
node	DendriteNode
parent	DendriteNode
return	void

TLPNodes() public method

public TLPNodes ( StreamWriter sw, DendriteNode node, DendriteNode parent, int &count ) : void
sw	System.IO.StreamWriter
node	DendriteNode
parent	DendriteNode
count	int
return	void

TLPRadius() public method

public TLPRadius ( StreamWriter sw, DendriteNode node, DendriteNode parent ) : void
sw	System.IO.StreamWriter
node	DendriteNode
parent	DendriteNode
return	void