C# Class ImsInformed.Domain.DirectInjection.ExtractedIonChromatogram

This is the XIC summed over the centerMz but not drift time axis.

Public Methods

Method	Description
AverageXICFromFrames ( DataReader uimfReader, int frameNumberFrom, int frameNumberTo, double centerMz, double massToleranceInPpm, double centerDriftTimeInMs, double driftTimeErrorInMs ) : ExtractedIonChromatogram
ExtractedIonChromatogram ( ) : System
ExtractedIonChromatogram ( DataReader uimfReader, int frameNumber, double centerMz, double massToleranceInPpm ) : System	Initializes a new instance of the ExtractedIonChromatogram class. Get the extracted ion chromatogram from the whole drift time scan range.
ExtractedIonChromatogram ( DataReader uimfReader, int frameNumber, double centerMz, double massToleranceInPpm, double centerDriftTimeInMs, double driftTimeErrorInMs ) : System	Initializes a new instance of the ExtractedIonChromatogram class. Get the extracted ion chromatogram from the a particular drift time scan range.
VerifyFrameNumber ( IntensityPoint point, int frameNumber ) : void	The verify frame number.
addSortedIntensityPointList ( List A, List B, int numberOfMobilityScans ) : List	Add sorted intensity point list. Classical algorithm for merging 2 sorted list.
operator ( ) : ExtractedIonChromatogram	The +.

Method	Description
ExtractedIonChromatogram ( ExtractedIonChromatogram a, ExtractedIonChromatogram b ) : System	Initializes a new instance of the ExtractedIonChromatogram class. XIC is a list of intensity points sorted by Mobility Scan number from low to high.

public static AverageXICFromFrames ( DataReader uimfReader, int frameNumberFrom, int frameNumberTo, double centerMz, double massToleranceInPpm, double centerDriftTimeInMs, double driftTimeErrorInMs ) : ExtractedIonChromatogram
uimfReader	DataReader
frameNumberFrom	int
frameNumberTo	int
centerMz	double
massToleranceInPpm	double
centerDriftTimeInMs	double
driftTimeErrorInMs	double
return	ExtractedIonChromatogram

public ExtractedIonChromatogram ( ) : System
return	System

Initializes a new instance of the ExtractedIonChromatogram class. Get the extracted ion chromatogram from the whole drift time scan range.

public ExtractedIonChromatogram ( DataReader uimfReader, int frameNumber, double centerMz, double massToleranceInPpm ) : System
uimfReader	DataReader	/// The UIMF reader. ///
frameNumber	int	/// The frame number. ///
centerMz	double	/// The MZ. ///
massToleranceInPpm	double	/// The mass Tolerance In Ppm. ///
return	System

Initializes a new instance of the ExtractedIonChromatogram class. Get the extracted ion chromatogram from the a particular drift time scan range.

public ExtractedIonChromatogram ( DataReader uimfReader, int frameNumber, double centerMz, double massToleranceInPpm, double centerDriftTimeInMs, double driftTimeErrorInMs ) : System
uimfReader	DataReader	/// The uimf reader. ///
frameNumber	int	/// The frame number. ///
centerMz	double	/// The center mz. ///
massToleranceInPpm	double	/// The mass tolerance in ppm. ///
centerDriftTimeInMs	double	/// The center drift time. ///
driftTimeErrorInMs	double	/// The drift time error in ms. ///
return	System

The verify frame number.

///

public static VerifyFrameNumber ( IntensityPoint point, int frameNumber ) : void
point	IntensityPoint	/// The point. ///
frameNumber	int	/// The frame number. ///
return	void

Add sorted intensity point list. Classical algorithm for merging 2 sorted list.

public static addSortedIntensityPointList ( List A, List B, int numberOfMobilityScans ) : List
A	List	/// The a. ///
B	List	/// The b. ///
numberOfMobilityScans	int	/// The number of mobility scans. ///
return	List

The +.

public static operator ( ) : ExtractedIonChromatogram
return	ExtractedIonChromatogram