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GetBestLR2BinCount ( string tumorBinnedPath, IEnumerable normalBinnedPaths, string bestBinnedPath, NexteraManifest manifest = null ) : void |
Pick the best normal control that has the smallest mean squared log-ratios (LR2s). |
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GetBinRatio ( string tumorBinnedPath, string normalBinnedPath, string ratioBinnedPath, string ploidyBedPath, NexteraManifest manifest = null ) : void |
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GetMeanSquaredLogRatios ( double tumorBinCounts, double normalBinCounts ) : int>.Tuple |
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GetPloidy ( PloidyInfo referencePloidy, string chrom, int start, int end, int defaultPloidy = 2 ) : int |
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GetWeightedAverageBinCount ( IEnumerable binnedPaths, string mergedBinnedPath, NexteraManifest manifest = null ) : void |
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