C# Class CSMSL.Proteomics.Protein

Inheritance: AminoAcidPolymer

Afficher le fichier Open project: dbaileychess/CSMSL Class Usage Examples

Méthodes publiques

Méthode	Description
Digest ( IEnumerable proteases, int maxMissedCleavages = 3, int minLength = 1, int maxLength = int.MaxValue, bool initiatorMethonine = true, bool includeModifications = false, bool semiDigestion = false ) : IEnumerable	Digests this protein into peptides.
Digest ( IProtease protease, int maxMissedCleavages = 3, int minLength = 1, int maxLength = int.MaxValue, bool initiatorMethonine = true, bool includeModifications = false, bool semiDigestion = false ) : IEnumerable	Digests this protein into peptides.
Protein ( string sequence, string description = "", bool isDecoy = false ) : System.Collections.Generic
ToFasta ( ) : Fasta	Converts this protein into the fasta format

Method Details

Digest() public méthode

Digests this protein into peptides.

public Digest ( IEnumerable proteases, int maxMissedCleavages = 3, int minLength = 1, int maxLength = int.MaxValue, bool initiatorMethonine = true, bool includeModifications = false, bool semiDigestion = false ) : IEnumerable
proteases	IEnumerable	The proteases to digest with
maxMissedCleavages	int	The max number of missed cleavages generated, 0 means no missed cleavages
minLength	int	The minimum length (in amino acids) of the peptide
maxLength	int	The maximum length (in amino acids) of the peptide
initiatorMethonine	bool
includeModifications	bool
semiDigestion	bool
Résultat	IEnumerable

Digest() public méthode

Digests this protein into peptides.

public Digest ( IProtease protease, int maxMissedCleavages = 3, int minLength = 1, int maxLength = int.MaxValue, bool initiatorMethonine = true, bool includeModifications = false, bool semiDigestion = false ) : IEnumerable
protease	IProtease	The protease to digest with
maxMissedCleavages	int	The max number of missed cleavages generated, 0 means no missed cleavages
minLength	int	The minimum length (in amino acids) of the peptide
maxLength	int	The maximum length (in amino acids) of the peptide
initiatorMethonine	bool
includeModifications	bool
semiDigestion	bool
Résultat	IEnumerable

Protein() public méthode

public Protein ( string sequence, string description = "", bool isDecoy = false ) : System.Collections.Generic
sequence	string
description	string
isDecoy	bool
Résultat	System.Collections.Generic

ToFasta() public méthode

Converts this protein into the fasta format

public ToFasta ( ) : Fasta
Résultat	Fasta