C# Class CSMSL.Proteomics.Protein

Inheritance: AminoAcidPolymer
Afficher le fichier Open project: dbaileychess/CSMSL Class Usage Examples

Méthodes publiques

Méthode Description
Digest ( IEnumerable proteases, int maxMissedCleavages = 3, int minLength = 1, int maxLength = int.MaxValue, bool initiatorMethonine = true, bool includeModifications = false, bool semiDigestion = false ) : IEnumerable

Digests this protein into peptides.

Digest ( IProtease protease, int maxMissedCleavages = 3, int minLength = 1, int maxLength = int.MaxValue, bool initiatorMethonine = true, bool includeModifications = false, bool semiDigestion = false ) : IEnumerable

Digests this protein into peptides.

Protein ( string sequence, string description = "", bool isDecoy = false ) : System.Collections.Generic
ToFasta ( ) : Fasta

Converts this protein into the fasta format

Method Details

Digest() public méthode

Digests this protein into peptides.
public Digest ( IEnumerable proteases, int maxMissedCleavages = 3, int minLength = 1, int maxLength = int.MaxValue, bool initiatorMethonine = true, bool includeModifications = false, bool semiDigestion = false ) : IEnumerable
proteases IEnumerable The proteases to digest with
maxMissedCleavages int The max number of missed cleavages generated, 0 means no missed cleavages
minLength int The minimum length (in amino acids) of the peptide
maxLength int The maximum length (in amino acids) of the peptide
initiatorMethonine bool
includeModifications bool
semiDigestion bool
Résultat IEnumerable

Digest() public méthode

Digests this protein into peptides.
public Digest ( IProtease protease, int maxMissedCleavages = 3, int minLength = 1, int maxLength = int.MaxValue, bool initiatorMethonine = true, bool includeModifications = false, bool semiDigestion = false ) : IEnumerable
protease IProtease The protease to digest with
maxMissedCleavages int The max number of missed cleavages generated, 0 means no missed cleavages
minLength int The minimum length (in amino acids) of the peptide
maxLength int The maximum length (in amino acids) of the peptide
initiatorMethonine bool
includeModifications bool
semiDigestion bool
Résultat IEnumerable

Protein() public méthode

public Protein ( string sequence, string description = "", bool isDecoy = false ) : System.Collections.Generic
sequence string
description string
isDecoy bool
Résultat System.Collections.Generic

ToFasta() public méthode

Converts this protein into the fasta format
public ToFasta ( ) : Fasta
Résultat Fasta