C# Class natix.CompactDS.FMIndex

Inheritance: ITextIndex

Mostrar archivo Open project: sadit/natix

Public Properties

Property	Type	Description
SA_invsamples	ListIFS
SA_marked	Bitmap
SA_samples	ListIFS
charT	int[]
newF	Bitmap
seqIndex	Sequence

Public Methods

Method	Description
Build ( string sa_name, SequenceBuilder seq_builder = null ) : void
CountOcc ( IList query ) : int
Extract ( int start_pos, int len ) : IList
FMIndex ( ) : System
Load ( string basename ) : void
Locate ( IList query ) : IList
Locate ( int suffix ) : int
Save ( string basename ) : void
Search ( IList query, int &start_pos, int &end_pos ) : bool

Private Methods

Method	Description
GetCharId ( int c ) : int
LF ( int i ) : int
_Reverse ( IList O ) : IList

Method Details

Build() public method

public Build ( string sa_name, SequenceBuilder seq_builder = null ) : void
sa_name	string
seq_builder	SequenceBuilder
return	void

CountOcc() public method

public CountOcc ( IList query ) : int
query	IList
return	int

Extract() public method

public Extract ( int start_pos, int len ) : IList
start_pos	int
len	int
return	IList

FMIndex() public method

public FMIndex ( ) : System
return	System

Load() public method

public Load ( string basename ) : void
basename	string
return	void

Locate() public method

public Locate ( IList query ) : IList
query	IList
return	IList

Locate() public method

public Locate ( int suffix ) : int
suffix	int
return	int

Save() public method

public Save ( string basename ) : void
basename	string
return	void

Search() public method

public Search ( IList query, int &start_pos, int &end_pos ) : bool
query	IList
start_pos	int
end_pos	int
return	bool

Property Details

SA_invsamples public_oe property

public ListIFS SA_invsamples
return	ListIFS

SA_marked public_oe property

public Bitmap,natix.CompactDS SA_marked
return	Bitmap

SA_samples public_oe property

public ListIFS SA_samples
return	ListIFS

charT public_oe property

public int[] charT
return	int[]

newF public_oe property

public Bitmap,natix.CompactDS newF
return	Bitmap

seqIndex public_oe property

public Sequence seqIndex
return	Sequence