C# Class libsbml.SBase

Inheritance: IDisposable
Mostrar archivo Open project: sys-bio/libroadrunner-deps Class Usage Examples

Protected Properties

Property Type Description
swigCMemOwn bool

Public Methods

Method Description
Dispose ( ) : void
Equals ( Object sb ) : bool
GetHashCode ( ) : int
addCVTerm ( CVTerm term ) : int
addCVTerm ( CVTerm term, bool newBag ) : int
appendAnnotation ( XMLNode annotation ) : int
appendAnnotation ( string annotation ) : int
appendNotes ( XMLNode notes ) : int
appendNotes ( string notes ) : int
checkCompatibility ( SBase arg0 ) : int
checkMathMLNamespace ( XMLToken elem ) : string
clone ( ) : SBase
connectToChild ( ) : void
connectToParent ( SBase parent ) : void
containsUndeclaredUnits ( ) : bool
deleteDisabledPlugins ( ) : void
deleteDisabledPlugins ( bool recursive ) : void
disablePackage ( string pkgURI, string pkgPrefix ) : int
divideAssignmentsToSIdByFunction ( string id, ASTNode function ) : void
enablePackage ( string pkgURI, string pkgPrefix, bool flag ) : int
enablePackageInternal ( string pkgURI, string pkgPrefix, bool flag ) : void
getAncestorOfType ( int type ) : SBase
getAncestorOfType ( int type, string pkgName ) : SBase
getAnnotation ( ) : XMLNode
getAnnotationString ( ) : string
getCVTerm ( long n ) : CVTerm
getCVTerms ( ) : CVTermList
getColumn ( ) : long
getDerivedUnitDefinition ( ) : UnitDefinition
getDisabledPlugin ( long n ) : SBasePlugin
getElementByMetaId ( string metaid ) : SBase
getElementBySId ( string id ) : SBase
getElementFromPluginsByMetaId ( string metaid ) : SBase
getElementFromPluginsBySId ( string id ) : SBase
getElementName ( ) : string
getId ( ) : string
getLevel ( ) : long
getLine ( ) : long
getListOfAllElements ( ) : SBaseList
getListOfAllElements ( ElementFilter filter ) : SBaseList
getListOfAllElementsFromPlugins ( ) : SBaseList
getListOfAllElementsFromPlugins ( ElementFilter filter ) : SBaseList
getMetaId ( ) : string
getModel ( ) : Model
getModelHistory ( ) : ModelHistory
getName ( ) : string
getNamespaces ( ) : XMLNamespaces
getNotes ( ) : XMLNode
getNotesString ( ) : string
getNumCVTerms ( ) : long
getNumDisabledPlugins ( ) : long
getNumPlugins ( ) : long
getPackageName ( ) : string
getPackageVersion ( ) : long
getParentSBMLObject ( ) : SBase
getPlugin ( long n ) : SBasePlugin
getPlugin ( string package ) : SBasePlugin
getPrefix ( ) : string
getResourceBiologicalQualifier ( string resource ) : int
getResourceModelQualifier ( string resource ) : int
getSBMLDocument ( ) : SBMLDocument
getSBMLNamespaces ( ) : SBMLNamespaces
getSBOTerm ( ) : int
getSBOTermAsURL ( ) : string
getSBOTermID ( ) : string
getTypeCode ( ) : int
getURI ( ) : string
getVersion ( ) : long
hasNonstandardIdentifierBeginningWith ( string prefix ) : bool
hasRequiredAttributes ( ) : bool
hasRequiredElements ( ) : bool
hasValidLevelVersionNamespaceCombination ( ) : bool
isPackageEnabled ( string pkgName ) : bool
isPackageURIEnabled ( string pkgURI ) : bool
isPkgEnabled ( string pkgName ) : bool
isPkgURIEnabled ( string pkgURI ) : bool
isSetAnnotation ( ) : bool
isSetId ( ) : bool
isSetMetaId ( ) : bool
isSetModelHistory ( ) : bool
isSetName ( ) : bool
isSetNotes ( ) : bool
isSetSBOTerm ( ) : bool
isSetUserData ( ) : bool
matchesRequiredSBMLNamespacesForAddition ( SBase sb ) : bool
matchesSBMLNamespaces ( SBase sb ) : bool
multiplyAssignmentsToSIdByFunction ( string id, ASTNode function ) : void
operator ( ) : bool
prependStringToAllIdentifiers ( string prefix ) : int
removeFromParentAndDelete ( ) : int
removeTopLevelAnnotationElement ( string elementName ) : int
removeTopLevelAnnotationElement ( string elementName, string elementURI ) : int
removeTopLevelAnnotationElement ( string elementName, string elementURI, bool removeEmpty ) : int
renameMetaIdRefs ( string oldid, string newid ) : void
renameSIdRefs ( string oldid, string newid ) : void
renameUnitSIdRefs ( string oldid, string newid ) : void
replaceSIDWithFunction ( string id, ASTNode function ) : void
replaceTopLevelAnnotationElement ( XMLNode annotation ) : int
replaceTopLevelAnnotationElement ( string annotation ) : int
setAnnotation ( XMLNode annotation ) : int
setAnnotation ( string annotation ) : int
setId ( string sid ) : int
setMetaId ( string metaid ) : int
setModelHistory ( ModelHistory history ) : int
setName ( string name ) : int
setNamespaces ( XMLNamespaces xmlns ) : int
setNotes ( XMLNode notes ) : int
setNotes ( string notes ) : int
setNotes ( string notes, bool addXHTMLMarkup ) : int
setSBMLNamespacesAndOwn ( SBMLNamespaces disownedNs ) : void
setSBOTerm ( int value ) : int
setSBOTerm ( string sboid ) : int
toSBML ( ) : string
toXMLNode ( ) : XMLNode
transformIdentifiers ( IdentifierTransformer idTransformer ) : int
unsetAnnotation ( ) : int
unsetCVTerms ( ) : int
unsetId ( ) : int
unsetMetaId ( ) : int
unsetModelHistory ( ) : int
unsetName ( ) : int
unsetNotes ( ) : int
unsetSBOTerm ( ) : int
unsetUserData ( ) : int
writeExtensionElements ( XMLOutputStream stream ) : void

Private Methods

Method Description
SBase ( IntPtr cPtr, bool cMemoryOwn ) : System
getCPtr ( SBase obj ) : HandleRef
getCPtrAndDisown ( SBase obj ) : HandleRef

Method Details

Dispose() public method

public Dispose ( ) : void
return void

Equals() public method

public Equals ( Object sb ) : bool
sb Object
return bool

GetHashCode() public method

public GetHashCode ( ) : int
return int

addCVTerm() public method

public addCVTerm ( CVTerm term ) : int
term CVTerm
return int

addCVTerm() public method

public addCVTerm ( CVTerm term, bool newBag ) : int
term CVTerm
newBag bool
return int

appendAnnotation() public method

public appendAnnotation ( XMLNode annotation ) : int
annotation XMLNode
return int

appendAnnotation() public method

public appendAnnotation ( string annotation ) : int
annotation string
return int

appendNotes() public method

public appendNotes ( XMLNode notes ) : int
notes XMLNode
return int

appendNotes() public method

public appendNotes ( string notes ) : int
notes string
return int

checkCompatibility() public method

public checkCompatibility ( SBase arg0 ) : int
arg0 SBase
return int

checkMathMLNamespace() public method

public checkMathMLNamespace ( XMLToken elem ) : string
elem XMLToken
return string

clone() public method

public clone ( ) : SBase
return SBase

connectToChild() public method

public connectToChild ( ) : void
return void

connectToParent() public method

public connectToParent ( SBase parent ) : void
parent SBase
return void

containsUndeclaredUnits() public method

public containsUndeclaredUnits ( ) : bool
return bool

deleteDisabledPlugins() public method

public deleteDisabledPlugins ( ) : void
return void

deleteDisabledPlugins() public method

public deleteDisabledPlugins ( bool recursive ) : void
recursive bool
return void

disablePackage() public method

public disablePackage ( string pkgURI, string pkgPrefix ) : int
pkgURI string
pkgPrefix string
return int

divideAssignmentsToSIdByFunction() public method

public divideAssignmentsToSIdByFunction ( string id, ASTNode function ) : void
id string
function ASTNode
return void

enablePackage() public method

public enablePackage ( string pkgURI, string pkgPrefix, bool flag ) : int
pkgURI string
pkgPrefix string
flag bool
return int

enablePackageInternal() public method

public enablePackageInternal ( string pkgURI, string pkgPrefix, bool flag ) : void
pkgURI string
pkgPrefix string
flag bool
return void

getAncestorOfType() public method

public getAncestorOfType ( int type ) : SBase
type int
return SBase

getAncestorOfType() public method

public getAncestorOfType ( int type, string pkgName ) : SBase
type int
pkgName string
return SBase

getAnnotation() public method

public getAnnotation ( ) : XMLNode
return XMLNode

getAnnotationString() public method

public getAnnotationString ( ) : string
return string

getCVTerm() public method

public getCVTerm ( long n ) : CVTerm
n long
return CVTerm

getCVTerms() public method

public getCVTerms ( ) : CVTermList
return CVTermList

getColumn() public method

public getColumn ( ) : long
return long

getDerivedUnitDefinition() public method

public getDerivedUnitDefinition ( ) : UnitDefinition
return UnitDefinition

getDisabledPlugin() public method

public getDisabledPlugin ( long n ) : SBasePlugin
n long
return SBasePlugin

getElementByMetaId() public method

public getElementByMetaId ( string metaid ) : SBase
metaid string
return SBase

getElementBySId() public method

public getElementBySId ( string id ) : SBase
id string
return SBase

getElementFromPluginsByMetaId() public method

public getElementFromPluginsByMetaId ( string metaid ) : SBase
metaid string
return SBase

getElementFromPluginsBySId() public method

public getElementFromPluginsBySId ( string id ) : SBase
id string
return SBase

getElementName() public method

public getElementName ( ) : string
return string

getId() public method

public getId ( ) : string
return string

getLevel() public method

public getLevel ( ) : long
return long

getLine() public method

public getLine ( ) : long
return long

getListOfAllElements() public method

public getListOfAllElements ( ) : SBaseList
return SBaseList

getListOfAllElements() public method

public getListOfAllElements ( ElementFilter filter ) : SBaseList
filter ElementFilter
return SBaseList

getListOfAllElementsFromPlugins() public method

public getListOfAllElementsFromPlugins ( ) : SBaseList
return SBaseList

getListOfAllElementsFromPlugins() public method

public getListOfAllElementsFromPlugins ( ElementFilter filter ) : SBaseList
filter ElementFilter
return SBaseList

getMetaId() public method

public getMetaId ( ) : string
return string

getModel() public method

public getModel ( ) : Model
return Model

getModelHistory() public method

public getModelHistory ( ) : ModelHistory
return ModelHistory

getName() public method

public getName ( ) : string
return string

getNamespaces() public method

public getNamespaces ( ) : XMLNamespaces
return XMLNamespaces

getNotes() public method

public getNotes ( ) : XMLNode
return XMLNode

getNotesString() public method

public getNotesString ( ) : string
return string

getNumCVTerms() public method

public getNumCVTerms ( ) : long
return long

getNumDisabledPlugins() public method

public getNumDisabledPlugins ( ) : long
return long

getNumPlugins() public method

public getNumPlugins ( ) : long
return long

getPackageName() public method

public getPackageName ( ) : string
return string

getPackageVersion() public method

public getPackageVersion ( ) : long
return long

getParentSBMLObject() public method

public getParentSBMLObject ( ) : SBase
return SBase

getPlugin() public method

public getPlugin ( long n ) : SBasePlugin
n long
return SBasePlugin

getPlugin() public method

public getPlugin ( string package ) : SBasePlugin
package string
return SBasePlugin

getPrefix() public method

public getPrefix ( ) : string
return string

getResourceBiologicalQualifier() public method

public getResourceBiologicalQualifier ( string resource ) : int
resource string
return int

getResourceModelQualifier() public method

public getResourceModelQualifier ( string resource ) : int
resource string
return int

getSBMLDocument() public method

public getSBMLDocument ( ) : SBMLDocument
return SBMLDocument

getSBMLNamespaces() public method

public getSBMLNamespaces ( ) : SBMLNamespaces
return SBMLNamespaces

getSBOTerm() public method

public getSBOTerm ( ) : int
return int

getSBOTermAsURL() public method

public getSBOTermAsURL ( ) : string
return string

getSBOTermID() public method

public getSBOTermID ( ) : string
return string

getTypeCode() public method

public getTypeCode ( ) : int
return int

getURI() public method

public getURI ( ) : string
return string

getVersion() public method

public getVersion ( ) : long
return long

hasNonstandardIdentifierBeginningWith() public method

public hasNonstandardIdentifierBeginningWith ( string prefix ) : bool
prefix string
return bool

hasRequiredAttributes() public method

public hasRequiredAttributes ( ) : bool
return bool

hasRequiredElements() public method

public hasRequiredElements ( ) : bool
return bool

hasValidLevelVersionNamespaceCombination() public method

public hasValidLevelVersionNamespaceCombination ( ) : bool
return bool

isPackageEnabled() public method

public isPackageEnabled ( string pkgName ) : bool
pkgName string
return bool

isPackageURIEnabled() public method

public isPackageURIEnabled ( string pkgURI ) : bool
pkgURI string
return bool

isPkgEnabled() public method

public isPkgEnabled ( string pkgName ) : bool
pkgName string
return bool

isPkgURIEnabled() public method

public isPkgURIEnabled ( string pkgURI ) : bool
pkgURI string
return bool

isSetAnnotation() public method

public isSetAnnotation ( ) : bool
return bool

isSetId() public method

public isSetId ( ) : bool
return bool

isSetMetaId() public method

public isSetMetaId ( ) : bool
return bool

isSetModelHistory() public method

public isSetModelHistory ( ) : bool
return bool

isSetName() public method

public isSetName ( ) : bool
return bool

isSetNotes() public method

public isSetNotes ( ) : bool
return bool

isSetSBOTerm() public method

public isSetSBOTerm ( ) : bool
return bool

isSetUserData() public method

public isSetUserData ( ) : bool
return bool

matchesRequiredSBMLNamespacesForAddition() public method

public matchesRequiredSBMLNamespacesForAddition ( SBase sb ) : bool
sb SBase
return bool

matchesSBMLNamespaces() public method

public matchesSBMLNamespaces ( SBase sb ) : bool
sb SBase
return bool

multiplyAssignmentsToSIdByFunction() public method

public multiplyAssignmentsToSIdByFunction ( string id, ASTNode function ) : void
id string
function ASTNode
return void

operator() public static method

public static operator ( ) : bool
return bool

prependStringToAllIdentifiers() public method

public prependStringToAllIdentifiers ( string prefix ) : int
prefix string
return int

removeFromParentAndDelete() public method

public removeFromParentAndDelete ( ) : int
return int

removeTopLevelAnnotationElement() public method

public removeTopLevelAnnotationElement ( string elementName ) : int
elementName string
return int

removeTopLevelAnnotationElement() public method

public removeTopLevelAnnotationElement ( string elementName, string elementURI ) : int
elementName string
elementURI string
return int

removeTopLevelAnnotationElement() public method

public removeTopLevelAnnotationElement ( string elementName, string elementURI, bool removeEmpty ) : int
elementName string
elementURI string
removeEmpty bool
return int

renameMetaIdRefs() public method

public renameMetaIdRefs ( string oldid, string newid ) : void
oldid string
newid string
return void

renameSIdRefs() public method

public renameSIdRefs ( string oldid, string newid ) : void
oldid string
newid string
return void

renameUnitSIdRefs() public method

public renameUnitSIdRefs ( string oldid, string newid ) : void
oldid string
newid string
return void

replaceSIDWithFunction() public method

public replaceSIDWithFunction ( string id, ASTNode function ) : void
id string
function ASTNode
return void

replaceTopLevelAnnotationElement() public method

public replaceTopLevelAnnotationElement ( XMLNode annotation ) : int
annotation XMLNode
return int

replaceTopLevelAnnotationElement() public method

public replaceTopLevelAnnotationElement ( string annotation ) : int
annotation string
return int

setAnnotation() public method

public setAnnotation ( XMLNode annotation ) : int
annotation XMLNode
return int

setAnnotation() public method

public setAnnotation ( string annotation ) : int
annotation string
return int

setId() public method

public setId ( string sid ) : int
sid string
return int

setMetaId() public method

public setMetaId ( string metaid ) : int
metaid string
return int

setModelHistory() public method

public setModelHistory ( ModelHistory history ) : int
history ModelHistory
return int

setName() public method

public setName ( string name ) : int
name string
return int

setNamespaces() public method

public setNamespaces ( XMLNamespaces xmlns ) : int
xmlns XMLNamespaces
return int

setNotes() public method

public setNotes ( XMLNode notes ) : int
notes XMLNode
return int

setNotes() public method

public setNotes ( string notes ) : int
notes string
return int

setNotes() public method

public setNotes ( string notes, bool addXHTMLMarkup ) : int
notes string
addXHTMLMarkup bool
return int

setSBMLNamespacesAndOwn() public method

public setSBMLNamespacesAndOwn ( SBMLNamespaces disownedNs ) : void
disownedNs SBMLNamespaces
return void

setSBOTerm() public method

public setSBOTerm ( int value ) : int
value int
return int

setSBOTerm() public method

public setSBOTerm ( string sboid ) : int
sboid string
return int

toSBML() public method

public toSBML ( ) : string
return string

toXMLNode() public method

public toXMLNode ( ) : XMLNode
return XMLNode

transformIdentifiers() public method

public transformIdentifiers ( IdentifierTransformer idTransformer ) : int
idTransformer IdentifierTransformer
return int

unsetAnnotation() public method

public unsetAnnotation ( ) : int
return int

unsetCVTerms() public method

public unsetCVTerms ( ) : int
return int

unsetId() public method

public unsetId ( ) : int
return int

unsetMetaId() public method

public unsetMetaId ( ) : int
return int

unsetModelHistory() public method

public unsetModelHistory ( ) : int
return int

unsetName() public method

public unsetName ( ) : int
return int

unsetNotes() public method

public unsetNotes ( ) : int
return int

unsetSBOTerm() public method

public unsetSBOTerm ( ) : int
return int

unsetUserData() public method

public unsetUserData ( ) : int
return int

writeExtensionElements() public method

public writeExtensionElements ( XMLOutputStream stream ) : void
stream XMLOutputStream
return void

Property Details

swigCMemOwn protected_oe property

protected bool swigCMemOwn
return bool