C# Class CanvasBin.CanvasBinParameters

Mostrar archivo Open project: Illumina/canvas Class Usage Examples

Public Properties

Property Type Description
bamFile string
binSize int
binSizeOnly bool
chromosome string
countsPerBin int
coverageMode CanvasCommon.CanvasCoverageMode
filterFile string
intermediatePaths List
isPairedEnd bool
manifestFile string
outFile string
predefinedBinsFile string
referenceFile string

Public Methods

Method Description
ParseCommandLine ( string args ) : CanvasBinParameters

Private Methods

Method Description
ShowHelp ( OptionSet p ) : void

Command line help message.

Method Details

ParseCommandLine() public static method

public static ParseCommandLine ( string args ) : CanvasBinParameters
args string
return CanvasBinParameters

Property Details

bamFile public_oe property

public string bamFile
return string

binSize public_oe property

public int binSize
return int

binSizeOnly public_oe property

public bool binSizeOnly
return bool

chromosome public_oe property

public string chromosome
return string

countsPerBin public_oe property

public int countsPerBin
return int

coverageMode public_oe property

public CanvasCommon.CanvasCoverageMode coverageMode
return CanvasCommon.CanvasCoverageMode

filterFile public_oe property

public string filterFile
return string

intermediatePaths public_oe property

public List intermediatePaths
return List

isPairedEnd public_oe property

public bool isPairedEnd
return bool

manifestFile public_oe property

public string manifestFile
return string

outFile public_oe property

public string outFile
return string

predefinedBinsFile public_oe property

public string predefinedBinsFile
return string

referenceFile public_oe property

public string referenceFile
return string