C# Class LibiadaCore.Core.Chain

Sequence class.

Inheritance: BaseChain, IBaseObject

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Public Methods

Method	Description
Chain ( ) : System.Collections.Generic	Initializes a new instance of the Chain class.
Chain ( List source ) : System.Collections.Generic	Initializes a new instance of the Chain class from string. Each character becomes element.
Chain ( int length ) : System.Collections.Generic	Initializes a new instance of the Chain class.
Chain ( int building, Alphabet alphabet ) : System.Collections.Generic	Initializes a new instance of the Chain class with provided building and alphabet. Only simple validation is made.
Chain ( int building, Alphabet alphabet, long id ) : System.Collections.Generic	Initializes a new instance of the Chain class with provided building and alphabet. Only simple validation is made.
Chain ( string source ) : System.Collections.Generic	Initializes a new instance of the Chain class from string. Each character becomes element.
ClearAndSetNewLength ( int length ) : void	Deletes chain (building and alphabet) and creates new empty chain with given length.
Clone ( ) : IBaseObject	Creates clone of this chain.
CongenericChain ( IBaseObject baseObject ) : CongenericChain	Returns clone of congeneric sequence of given element. If there is no such element in chain returns null.
CongenericChain ( int index ) : CongenericChain	Returns clone of congeneric sequence by index of its element in alphabet.
DeleteAt ( int index ) : void	Removes element from given position.
FillIntervalManagers ( ) : void	Fills all interval managers.
GetOccurrence ( IBaseObject element, int entry ) : int	Returns position of given occurrence of given element.
GetOrCreateCongenericChain ( IBaseObject element ) : CongenericChain	Gets or creates congeneric chain.
GetRelationIntervalsManager ( IBaseObject first, IBaseObject second ) : BinaryIntervalsManager	The get relation intervals manager.
GetRelationIntervalsManager ( int first, int second ) : BinaryIntervalsManager	The get relation interval manager.
RemoveAt ( int index ) : void	The remove at.
Set ( IBaseObject item, int index ) : void	Sets item in provided position.
TryGetCongenericChain ( IBaseObject element ) : CongenericChain	Tries to get congeneric chain. if there is no such chain returns null.

Protected Methods

Method	Description
FillClone ( IBaseObject clone ) : void	Fills clone of this chain.

Private Methods

Method	Description
FillCongenericChains ( ) : void	Fills all congeneric chains of this chain. All congeneric sequences stored in congenericChains field.

Method Details

Chain() public method

Initializes a new instance of the Chain class.

public Chain ( ) : System.Collections.Generic
return	System.Collections.Generic

Chain() public method

Initializes a new instance of the Chain class from string. Each character becomes element.

public Chain ( List source ) : System.Collections.Generic
source	List	/// The source string. ///
return	System.Collections.Generic

Chain() public method

Initializes a new instance of the Chain class.

public Chain ( int length ) : System.Collections.Generic
length	int	/// The length of chain. ///
return	System.Collections.Generic

Chain() public method

Initializes a new instance of the Chain class with provided building and alphabet. Only simple validation is made.

public Chain ( int building, Alphabet alphabet ) : System.Collections.Generic
building	int	/// The building of chain. ///
alphabet	Alphabet	/// The alphabet of chain. ///
return	System.Collections.Generic

Chain() public method

Initializes a new instance of the Chain class with provided building and alphabet. Only simple validation is made.

public Chain ( int building, Alphabet alphabet, long id ) : System.Collections.Generic
building	int	/// The building of chain. ///
alphabet	Alphabet	/// The alphabet of chain. ///
id	long	/// Id of sequence. ///
return	System.Collections.Generic

Chain() public method

Initializes a new instance of the Chain class from string. Each character becomes element.

public Chain ( string source ) : System.Collections.Generic
source	string	/// The source string. ///
return	System.Collections.Generic

ClearAndSetNewLength() public method

Deletes chain (building and alphabet) and creates new empty chain with given length.

public ClearAndSetNewLength ( int length ) : void
length	int	/// New chain length. ///
return	void

Clone() public method

Creates clone of this chain.

public Clone ( ) : IBaseObject
return	IBaseObject

CongenericChain() public method

Returns clone of congeneric sequence of given element. If there is no such element in chain returns null.

public CongenericChain ( IBaseObject baseObject ) : CongenericChain
baseObject	IBaseObject	/// Element of congeneric chain. ///
return	CongenericChain

CongenericChain() public method

Returns clone of congeneric sequence by index of its element in alphabet.

public CongenericChain ( int index ) : CongenericChain
index	int	/// Index of element of congeneric chain in alphabet. ///
return	CongenericChain

DeleteAt() public method

Removes element from given position.

public DeleteAt ( int index ) : void
index	int	/// Index of deleted position. ///
return	void

FillClone() protected method

Fills clone of this chain.

protected FillClone ( IBaseObject clone ) : void
clone	IBaseObject	/// The clone of chain. ///
return	void

FillIntervalManagers() public method

Fills all interval managers.

public FillIntervalManagers ( ) : void
return	void

GetOccurrence() public method

Returns position of given occurrence of given element.

public GetOccurrence ( IBaseObject element, int entry ) : int
element	IBaseObject	/// Element to find. ///
entry	int	/// occurrence of given element. ///
return	int

GetOrCreateCongenericChain() public method

Gets or creates congeneric chain.

public GetOrCreateCongenericChain ( IBaseObject element ) : CongenericChain
element	IBaseObject	/// The element of congeneric chain. ///
return	CongenericChain

GetRelationIntervalsManager() public method

The get relation intervals manager.

public GetRelationIntervalsManager ( IBaseObject first, IBaseObject second ) : BinaryIntervalsManager
first	IBaseObject	/// The first. ///
second	IBaseObject	/// The second. ///
return	BinaryIntervalsManager

GetRelationIntervalsManager() public method

The get relation interval manager.

public GetRelationIntervalsManager ( int first, int second ) : BinaryIntervalsManager
first	int	/// The first. ///
second	int	/// The second. ///
return	BinaryIntervalsManager

RemoveAt() public method

The remove at.

public RemoveAt ( int index ) : void
index	int	/// Index of deleted element. ///
return	void

Set() public method

Sets item in provided position.

public Set ( IBaseObject item, int index ) : void
item	IBaseObject	/// The item. ///
index	int	/// The index. ///
return	void

TryGetCongenericChain() public method

Tries to get congeneric chain. if there is no such chain returns null.

public TryGetCongenericChain ( IBaseObject element ) : CongenericChain
element	IBaseObject	/// The element of seeked congeneric chain. ///
return	CongenericChain