C# Class libsbml.Reaction

Inheritance: SBase
Show file Open project: sys-bio/libroadrunner-deps Class Usage Examples

Public Methods

Method Description
Dispose ( ) : void
Reaction ( Reaction orig ) : System
Reaction ( SBMLNamespaces sbmlns ) : System
Reaction ( long level, long version ) : System
addModifier ( ModifierSpeciesReference msr ) : int
addModifier ( Species species ) : int
addModifier ( Species species, string id ) : int
addProduct ( Species species ) : int
addProduct ( Species species, double stoichiometry ) : int
addProduct ( Species species, double stoichiometry, string id ) : int
addProduct ( Species species, double stoichiometry, string id, bool constant ) : int
addProduct ( SpeciesReference sr ) : int
addReactant ( Species species ) : int
addReactant ( Species species, double stoichiometry ) : int
addReactant ( Species species, double stoichiometry, string id ) : int
addReactant ( Species species, double stoichiometry, string id, bool constant ) : int
addReactant ( SpeciesReference sr ) : int
clone ( ) : Reaction
connectToChild ( ) : void
createKineticLaw ( ) : KineticLaw
createModifier ( ) : ModifierSpeciesReference
createProduct ( ) : SpeciesReference
createReactant ( ) : SpeciesReference
enablePackageInternal ( string pkgURI, string pkgPrefix, bool flag ) : void
getCompartment ( ) : string
getElementByMetaId ( string metaid ) : SBase
getElementBySId ( string id ) : SBase
getElementName ( ) : string
getFast ( ) : bool
getId ( ) : string
getKineticLaw ( ) : KineticLaw
getListOfModifiers ( ) : ListOfSpeciesReferences
getListOfProducts ( ) : ListOfSpeciesReferences
getListOfReactants ( ) : ListOfSpeciesReferences
getModifier ( long n ) : ModifierSpeciesReference
getModifier ( string species ) : ModifierSpeciesReference
getName ( ) : string
getNumModifiers ( ) : long
getNumProducts ( ) : long
getNumReactants ( ) : long
getProduct ( long n ) : SpeciesReference
getProduct ( string species ) : SpeciesReference
getReactant ( long n ) : SpeciesReference
getReactant ( string species ) : SpeciesReference
getReversible ( ) : bool
getTypeCode ( ) : int
hasRequiredAttributes ( ) : bool
initDefaults ( ) : void
isSetCompartment ( ) : bool
isSetFast ( ) : bool
isSetId ( ) : bool
isSetKineticLaw ( ) : bool
isSetName ( ) : bool
isSetReversible ( ) : bool
removeModifier ( long n ) : ModifierSpeciesReference
removeModifier ( string species ) : ModifierSpeciesReference
removeProduct ( long n ) : SpeciesReference
removeProduct ( string species ) : SpeciesReference
removeReactant ( long n ) : SpeciesReference
removeReactant ( string species ) : SpeciesReference
renameSIdRefs ( string oldid, string newid ) : void
setCompartment ( string sid ) : int
setFast ( bool value ) : int
setId ( string sid ) : int
setKineticLaw ( KineticLaw kl ) : int
setName ( string name ) : int
setReversible ( bool value ) : int
unsetCompartment ( ) : int
unsetFast ( ) : int
unsetKineticLaw ( ) : int
unsetName ( ) : int
unsetReversible ( ) : int

Private Methods

Method Description
Reaction ( IntPtr cPtr, bool cMemoryOwn ) : System
getCPtr ( Reaction obj ) : HandleRef
getCPtrAndDisown ( Reaction obj ) : HandleRef

Method Details

Dispose() public method

public Dispose ( ) : void
return void

Reaction() public method

public Reaction ( Reaction orig ) : System
orig Reaction
return System

Reaction() public method

public Reaction ( SBMLNamespaces sbmlns ) : System
sbmlns SBMLNamespaces
return System

Reaction() public method

public Reaction ( long level, long version ) : System
level long
version long
return System

addModifier() public method

public addModifier ( ModifierSpeciesReference msr ) : int
msr ModifierSpeciesReference
return int

addModifier() public method

public addModifier ( Species species ) : int
species Species
return int

addModifier() public method

public addModifier ( Species species, string id ) : int
species Species
id string
return int

addProduct() public method

public addProduct ( Species species ) : int
species Species
return int

addProduct() public method

public addProduct ( Species species, double stoichiometry ) : int
species Species
stoichiometry double
return int

addProduct() public method

public addProduct ( Species species, double stoichiometry, string id ) : int
species Species
stoichiometry double
id string
return int

addProduct() public method

public addProduct ( Species species, double stoichiometry, string id, bool constant ) : int
species Species
stoichiometry double
id string
constant bool
return int

addProduct() public method

public addProduct ( SpeciesReference sr ) : int
sr SpeciesReference
return int

addReactant() public method

public addReactant ( Species species ) : int
species Species
return int

addReactant() public method

public addReactant ( Species species, double stoichiometry ) : int
species Species
stoichiometry double
return int

addReactant() public method

public addReactant ( Species species, double stoichiometry, string id ) : int
species Species
stoichiometry double
id string
return int

addReactant() public method

public addReactant ( Species species, double stoichiometry, string id, bool constant ) : int
species Species
stoichiometry double
id string
constant bool
return int

addReactant() public method

public addReactant ( SpeciesReference sr ) : int
sr SpeciesReference
return int

clone() public method

public clone ( ) : Reaction
return Reaction

connectToChild() public method

public connectToChild ( ) : void
return void

createKineticLaw() public method

public createKineticLaw ( ) : KineticLaw
return KineticLaw

createModifier() public method

public createModifier ( ) : ModifierSpeciesReference
return ModifierSpeciesReference

createProduct() public method

public createProduct ( ) : SpeciesReference
return SpeciesReference

createReactant() public method

public createReactant ( ) : SpeciesReference
return SpeciesReference

enablePackageInternal() public method

public enablePackageInternal ( string pkgURI, string pkgPrefix, bool flag ) : void
pkgURI string
pkgPrefix string
flag bool
return void

getCompartment() public method

public getCompartment ( ) : string
return string

getElementByMetaId() public method

public getElementByMetaId ( string metaid ) : SBase
metaid string
return SBase

getElementBySId() public method

public getElementBySId ( string id ) : SBase
id string
return SBase

getElementName() public method

public getElementName ( ) : string
return string

getFast() public method

public getFast ( ) : bool
return bool

getId() public method

public getId ( ) : string
return string

getKineticLaw() public method

public getKineticLaw ( ) : KineticLaw
return KineticLaw

getListOfModifiers() public method

public getListOfModifiers ( ) : ListOfSpeciesReferences
return ListOfSpeciesReferences

getListOfProducts() public method

public getListOfProducts ( ) : ListOfSpeciesReferences
return ListOfSpeciesReferences

getListOfReactants() public method

public getListOfReactants ( ) : ListOfSpeciesReferences
return ListOfSpeciesReferences

getModifier() public method

public getModifier ( long n ) : ModifierSpeciesReference
n long
return ModifierSpeciesReference

getModifier() public method

public getModifier ( string species ) : ModifierSpeciesReference
species string
return ModifierSpeciesReference

getName() public method

public getName ( ) : string
return string

getNumModifiers() public method

public getNumModifiers ( ) : long
return long

getNumProducts() public method

public getNumProducts ( ) : long
return long

getNumReactants() public method

public getNumReactants ( ) : long
return long

getProduct() public method

public getProduct ( long n ) : SpeciesReference
n long
return SpeciesReference

getProduct() public method

public getProduct ( string species ) : SpeciesReference
species string
return SpeciesReference

getReactant() public method

public getReactant ( long n ) : SpeciesReference
n long
return SpeciesReference

getReactant() public method

public getReactant ( string species ) : SpeciesReference
species string
return SpeciesReference

getReversible() public method

public getReversible ( ) : bool
return bool

getTypeCode() public method

public getTypeCode ( ) : int
return int

hasRequiredAttributes() public method

public hasRequiredAttributes ( ) : bool
return bool

initDefaults() public method

public initDefaults ( ) : void
return void

isSetCompartment() public method

public isSetCompartment ( ) : bool
return bool

isSetFast() public method

public isSetFast ( ) : bool
return bool

isSetId() public method

public isSetId ( ) : bool
return bool

isSetKineticLaw() public method

public isSetKineticLaw ( ) : bool
return bool

isSetName() public method

public isSetName ( ) : bool
return bool

isSetReversible() public method

public isSetReversible ( ) : bool
return bool

removeModifier() public method

public removeModifier ( long n ) : ModifierSpeciesReference
n long
return ModifierSpeciesReference

removeModifier() public method

public removeModifier ( string species ) : ModifierSpeciesReference
species string
return ModifierSpeciesReference

removeProduct() public method

public removeProduct ( long n ) : SpeciesReference
n long
return SpeciesReference

removeProduct() public method

public removeProduct ( string species ) : SpeciesReference
species string
return SpeciesReference

removeReactant() public method

public removeReactant ( long n ) : SpeciesReference
n long
return SpeciesReference

removeReactant() public method

public removeReactant ( string species ) : SpeciesReference
species string
return SpeciesReference

renameSIdRefs() public method

public renameSIdRefs ( string oldid, string newid ) : void
oldid string
newid string
return void

setCompartment() public method

public setCompartment ( string sid ) : int
sid string
return int

setFast() public method

public setFast ( bool value ) : int
value bool
return int

setId() public method

public setId ( string sid ) : int
sid string
return int

setKineticLaw() public method

public setKineticLaw ( KineticLaw kl ) : int
kl KineticLaw
return int

setName() public method

public setName ( string name ) : int
name string
return int

setReversible() public method

public setReversible ( bool value ) : int
value bool
return int

unsetCompartment() public method

public unsetCompartment ( ) : int
return int

unsetFast() public method

public unsetFast ( ) : int
return int

unsetKineticLaw() public method

public unsetKineticLaw ( ) : int
return int

unsetName() public method

public unsetName ( ) : int
return int

unsetReversible() public method

public unsetReversible ( ) : int
return int