C# Class NSSplash.Splash

Inheritance: ISplash

Show file Open project: berlinguyinca/spectra-hash Class Usage Examples

Public Properties

Property	Type	Description
scalingOfRelativeIntensity	int

Public Methods

Method	Description
ToBase10 ( string number, int start_base ) : int
splashIt ( ISpectrum spectrum ) : string

Protected Methods

Method	Description
filterSpectrum ( ISpectrum s, double basePeakPercentage ) : ISpectrum
filterSpectrum ( ISpectrum s, int topIons ) : ISpectrum
filterSpectrum ( ISpectrum s, int topIons, double basePeakPercentage ) : ISpectrum

Private Methods

Method	Description
formatIntensity ( double number ) : string
formatMZ ( double number ) : string
getFirstBlock ( SpectrumType specType ) : string	Generates the version block
getHistoBlock ( ISpectrum spec, int nbase, int length, int binSize ) : string	calculates a histogram of the spectrum. If weighted, it sums the mz * intensities for the peaks in each bin
getSpectrumBlock ( ISpectrum spec ) : string	calculate the hash for the whole spectrum
translateBase ( string number, int initialBase, int finalBase, int fill ) : string	Translate a number in string format from one numerical base to another

Method Details

ToBase10() public static method

public static ToBase10 ( string number, int start_base ) : int
number	string
start_base	int
return	int

filterSpectrum() protected method

protected filterSpectrum ( ISpectrum s, double basePeakPercentage ) : ISpectrum
s	ISpectrum
basePeakPercentage	double
return	ISpectrum

filterSpectrum() protected method

protected filterSpectrum ( ISpectrum s, int topIons ) : ISpectrum
s	ISpectrum
topIons	int
return	ISpectrum

filterSpectrum() protected method

protected filterSpectrum ( ISpectrum s, int topIons, double basePeakPercentage ) : ISpectrum
s	ISpectrum
topIons	int
basePeakPercentage	double
return	ISpectrum

splashIt() public method

public splashIt ( ISpectrum spectrum ) : string
spectrum	ISpectrum
return	string

Property Details

scalingOfRelativeIntensity public static property

how to scale the spectrum

public static int scalingOfRelativeIntensity
return	int