C# Class CSMSL.Proteomics.AminoAcid

Inheritance: IAminoAcid

Show file Open project: dbaileychess/CSMSL Class Usage Examples

Public Methods

Method	Description
AddResidue ( string name, char oneLetterAbbreviation, string threeLetterAbbreviation, string chemicalFormula, ModificationSites site ) : AminoAcid
GetResidue ( char letter ) : AminoAcid	Gets the resdiue based on the residue's one-character symbol
GetResidue ( string symbol ) : AminoAcid	Get the residue based on the residues's symbol
ToHeavyModification ( bool c, bool n ) : ChemicalFormulaModification
ToString ( ) : string
TryGetResidue ( char letter, AminoAcid &residue ) : bool
TryGetResidue ( string symbol, AminoAcid &residue ) : bool

Private Methods

Method	Description
AddResidueToDictionary ( AminoAcid residue ) : void
AminoAcid ( ) : System	Construct the actual amino acids
AminoAcid ( string name, char oneLetterAbbreviation, string threeLetterAbbreviation, ChemicalFormula chemicalFormula, ModificationSites site ) : System
AminoAcid ( string name, char oneLetterAbbreviation, string threeLetterAbbreviation, string chemicalFormula, ModificationSites site ) : System

Method Details

AddResidue() public static method

public static AddResidue ( string name, char oneLetterAbbreviation, string threeLetterAbbreviation, string chemicalFormula, ModificationSites site ) : AminoAcid
name	string
oneLetterAbbreviation	char
threeLetterAbbreviation	string
chemicalFormula	string
site	ModificationSites
return	AminoAcid

GetResidue() public static method

Gets the resdiue based on the residue's one-character symbol

public static GetResidue ( char letter ) : AminoAcid
letter	char
return	AminoAcid

GetResidue() public static method

Get the residue based on the residues's symbol

public static GetResidue ( string symbol ) : AminoAcid
symbol	string
return	AminoAcid

ToHeavyModification() public method

public ToHeavyModification ( bool c, bool n ) : ChemicalFormulaModification
c	bool
n	bool
return	ChemicalFormulaModification

ToString() public method

public ToString ( ) : string
return	string

TryGetResidue() public static method

public static TryGetResidue ( char letter, AminoAcid &residue ) : bool
letter	char
residue	AminoAcid
return	bool

TryGetResidue() public static method

public static TryGetResidue ( string symbol, AminoAcid &residue ) : bool
symbol	string
residue	AminoAcid
return	bool