C# Class CSMSL.Analysis.Identification.MorpheusSearchEngine

High-resolution Proteomic Search Algorithm

Inheritance: MSSearchEngine

Show file Open project: dbaileychess/CSMSL Class Usage Examples

Public Methods

Method	Description
MorpheusSearchEngine ( ) : System.Collections.Generic
Search ( IMassSpectrum massSpectrum, Peptide peptide, FragmentTypes fragmentTypes, Tolerance productMassTolerance ) : PeptideSpectralMatch
Search ( IMassSpectrum spectrum, IEnumerable peptides, FragmentTypes fragmentTypes, Tolerance productMassTolerance ) : SortedMaxSizedContainer

Private Methods

Method	Description
Search ( double eMasses, double eIntenisties, double tMasses, Tolerance productTolerance, double tic ) : double	The main searching algorithm of Morpheus

Method Details

MorpheusSearchEngine() public method

public MorpheusSearchEngine ( ) : System.Collections.Generic
return	System.Collections.Generic

Search() public method

public Search ( IMassSpectrum massSpectrum, Peptide peptide, FragmentTypes fragmentTypes, Tolerance productMassTolerance ) : PeptideSpectralMatch
massSpectrum	IMassSpectrum
peptide	Peptide
fragmentTypes	FragmentTypes
productMassTolerance	Tolerance
return	PeptideSpectralMatch

Search() public method

public Search ( IMassSpectrum spectrum, IEnumerable peptides, FragmentTypes fragmentTypes, Tolerance productMassTolerance ) : SortedMaxSizedContainer
spectrum	IMassSpectrum
peptides	IEnumerable
fragmentTypes	FragmentTypes
productMassTolerance	Tolerance
return	SortedMaxSizedContainer