C# Class BatchFdrOptimizer.BatchFdrOptimizer

Show file Open project: dbaileychess/Compass Class Usage Examples

Public Methods

Method	Description
BatchFdrOptimizer ( IList csvFilepaths, string rawFolder, IEnumerable fixedModifications, double maximumPrecursorMassError, double precursorMassErrorIncrement, bool higherScoresAreBetter, double maximumFalseDiscoveryRate, bool unique, bool overallOutputs, bool phosphopeptideOutputs, string outputFolder ) : System
Optimize ( ) : void

Protected Methods

Method	Description
onFinished ( EventArgs e ) : void
onFinishedFile ( FilepathEventArgs e ) : void
onStarting ( EventArgs e ) : void
onStartingFile ( FilepathEventArgs e ) : void
onThrowException ( ExceptionEventArgs e ) : void
onUpdateProgress ( ProgressEventArgs e ) : void

Private Methods

Method	Description
CalculateMedian ( List values ) : double

Method Details

BatchFdrOptimizer() public method

public BatchFdrOptimizer ( IList csvFilepaths, string rawFolder, IEnumerable fixedModifications, double maximumPrecursorMassError, double precursorMassErrorIncrement, bool higherScoresAreBetter, double maximumFalseDiscoveryRate, bool unique, bool overallOutputs, bool phosphopeptideOutputs, string outputFolder ) : System
csvFilepaths	IList
rawFolder	string
fixedModifications	IEnumerable
maximumPrecursorMassError	double
precursorMassErrorIncrement	double
higherScoresAreBetter	bool
maximumFalseDiscoveryRate	double
unique	bool
overallOutputs	bool
phosphopeptideOutputs	bool
outputFolder	string
return	System

Optimize() public method

public Optimize ( ) : void
return	void

onFinished() protected method

protected onFinished ( EventArgs e ) : void
e	System.EventArgs
return	void

onFinishedFile() protected method

protected onFinishedFile ( FilepathEventArgs e ) : void
e	FilepathEventArgs
return	void

onStarting() protected method

protected onStarting ( EventArgs e ) : void
e	System.EventArgs
return	void

onStartingFile() protected method

protected onStartingFile ( FilepathEventArgs e ) : void
e	FilepathEventArgs
return	void

onThrowException() protected method

protected onThrowException ( ExceptionEventArgs e ) : void
e	ExceptionEventArgs
return	void

onUpdateProgress() protected method

protected onUpdateProgress ( ProgressEventArgs e ) : void
e	ProgressEventArgs
return	void