| Имя | Описание |
|---|---|
| CNInterval | |
| CanvasSegment | Contains information about a genomic interval. Has functions for computing copy numbers and their likelihoods. |
| CanvasVersionInfo | |
| ClusterModel | Stores information about clustering of CanvasSegment objects |
| CnvTypeExtensions | |
| CopyNumberOracle | This class represents a set of known copy number calls ("truth set"), useful for training models. |
| CoverageModel | |
| DensityClusteringModel | This class implements Density Clustering algorithm introduced in Rodriguez, Alex, and Alessandro Laio. "Clustering by fast search and find of density peaks." Science 344.6191 (2014): 1492-1496. The principle class members are Centroids (Delta in paper) and Rho that are defined as follows: fiven distance matric d[i,j] and distanceThreshold, for each data point i compure Rho(i) = total number of data points within distanceThreshold Centroids(i) = distance of the closes data point of higher density (min(d[i,j] for all j:=Rho(j)>Rho(i))) |
| ModelPoint | Represents a model point in (MAF, Coverage) space |
| PloidyInfo | |
| PloidyInterval | |
| SegmentInfo | Represents a point in (MAF, Coverage) space to be clustered: |
| SegmentPloidy | a SegmentPloidy represents a potential copy number state of a genomic interval. It has a copy number and a major chromosome count. |
